View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_low_33 (Length: 343)

Name: NF8926_low_33
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_low_33
NF8926_low_33
[»] chr8 (5 HSPs)
chr8 (44-334)||(43052593-43052883)
chr8 (155-214)||(2235643-2235702)
chr8 (124-183)||(5227528-5227587)
chr8 (119-192)||(8062317-8062390)
chr8 (17-45)||(43052901-43052929)
[»] chr1 (15 HSPs)
chr1 (116-214)||(10199395-10199493)
chr1 (119-200)||(34290224-34290305)
chr1 (116-214)||(4576790-4576888)
chr1 (116-214)||(7136985-7137083)
chr1 (116-194)||(45975675-45975753)
chr1 (124-192)||(5592694-5592762)
chr1 (159-214)||(25479609-25479664)
chr1 (113-199)||(38578509-38578596)
chr1 (134-192)||(16322852-16322910)
chr1 (123-188)||(4700079-4700144)
chr1 (113-174)||(33546480-33546541)
chr1 (113-193)||(836347-836427)
chr1 (159-211)||(16981926-16981978)
chr1 (156-216)||(20713681-20713741)
chr1 (113-214)||(38170677-38170780)
[»] chr2 (5 HSPs)
chr2 (113-200)||(39236496-39236583)
chr2 (160-214)||(43717123-43717177)
chr2 (113-182)||(1899923-1899992)
chr2 (124-192)||(7103491-7103560)
chr2 (113-194)||(12313180-12313261)
[»] chr5 (5 HSPs)
chr5 (134-214)||(17258870-17258950)
chr5 (118-194)||(41981872-41981948)
chr5 (118-214)||(2568645-2568741)
chr5 (122-178)||(6593290-6593346)
chr5 (167-211)||(41225088-41225132)
[»] chr4 (6 HSPs)
chr4 (113-178)||(3155585-3155650)
chr4 (113-194)||(25332756-25332838)
chr4 (113-178)||(53294137-53294202)
chr4 (134-178)||(20105453-20105497)
chr4 (124-192)||(33534178-33534246)
chr4 (159-199)||(55084483-55084523)
[»] chr7 (6 HSPs)
chr7 (118-214)||(752956-753052)
chr7 (106-178)||(39907778-39907850)
chr7 (113-182)||(12110342-12110411)
chr7 (113-182)||(43694589-43694658)
chr7 (116-192)||(15075094-15075170)
chr7 (160-212)||(33708432-33708484)
[»] chr3 (5 HSPs)
chr3 (160-204)||(24785290-24785334)
chr3 (119-178)||(30443881-30443940)
chr3 (127-214)||(40122740-40122827)
chr3 (159-209)||(24785233-24785283)
chr3 (118-195)||(28622005-28622082)
[»] scaffold0091 (1 HSPs)
scaffold0091 (124-183)||(6945-7004)
[»] chr6 (4 HSPs)
chr6 (119-194)||(9109258-9109333)
chr6 (163-194)||(33737774-33737805)
chr6 (159-199)||(28641751-28641791)
chr6 (109-193)||(35070475-35070559)


Alignment Details
Target: chr8 (Bit Score: 283; Significance: 1e-158; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 44 - 334
Target Start/End: Complemental strand, 43052883 - 43052593
Alignment:
Q  44 gagtgcgcttttccaatttaagcactgtgttatttcatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttt 143  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052883 gagtgcgcttttccaatttaagcactgtgttattttatgatatatcttttggcttctccaaaaaggtttaattatttttgtataagctacaagctgtttt 43052784  T
Q  144 tataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagac 243  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43052783 tataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcacattcctttactttaagtcattacaagac 43052684  T
Q  244 tgacctacattgtcaagttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagacctttgatgtccat 334  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  43052683 tgacctacattgtcaagttgttagtgtttttcactaaaatgcccatacccacctggaaacccataactctctcaagaccttttatgtccat 43052593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 155 - 214
Target Start/End: Complemental strand, 2235702 - 2235643
Alignment:
Q  155 ttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||||||||||| |||| |||||||| | ||||||||| ||||| |||||||||||||    
T  2235702 ttaaagagcttatggaaatgagctaaaaacgacttatgaacatgtcataaactattttca 2235643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 5227528 - 5227587
Alignment:
Q  124 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 183  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  5227528 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 5227587  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 119 - 192
Target Start/End: Original strand, 8062317 - 8062390
Alignment:
Q  119 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    |||||||||||||| |||||||||| |||| |||  ||| |||| ||||| ||||||||| ||| || ||||||    
T  8062317 ttttgtataagctataagctgttttcataagctatcttagagagattatggaaataagctgaaaacatcttatg 8062390  T

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Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 43052929 - 43052901
Alignment:
Q  17 ttgttgattttagtttgttatatttgaga 45  Q
    |||||||||||||||||||||||||||||    
T  43052929 ttgttgattttagtttgttatatttgaga 43052901  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 10199493 - 10199395
Alignment:
Q  116 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||| |||||| | | ||||| |||| |||| ||| |||| |||||||||||||||||||| ||| ||||||||||| ||||| ||| |||||||||    
T  10199493 tattttcgtataatcgataagcttttttcataagctattttagagagcttatgaaaataagctgaaaacaacttatgaacatgtcataagctattttca 10199395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 119 - 200
Target Start/End: Original strand, 34290224 - 34290305
Alignment:
Q  119 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 200  Q
    |||||||||||||| |||||||||| |||| |||  || |||| |||||||||||||||| ||| ||||||||||| |||||    
T  34290224 ttttgtataagctataagctgttttcataagctatcttgaagaacttatgaaaataagctgaaaacaacttatgaatatgtc 34290305  T

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Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Original strand, 4576790 - 4576888
Alignment:
Q  116 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||||||| ||| || |||||||||| |||| |||  || || | |||||||||||||||| ||  |||||||| || ||||| |||||||||||||    
T  4576790 tatttttgtacaagttataagctgttttcataagctatattgaataacttatgaaaataagctgaacacaacttataaacatgtcataaactattttca 4576888  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 214
Target Start/End: Complemental strand, 7137083 - 7136985
Alignment:
Q  116 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    ||||||||||||| ||| |||||||||| |||| |||  ||  ||| |||||||||||||||| |||  |||||||||| ||||| ||| | |||||||    
T  7137083 tatttttgtataatctataagctgttttcataagctatcttggagaacttatgaaaataagctgaaaataacttatgaatatgtcataagcgattttca 7136985  T

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Target: chr1; HSP #5
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 116 - 194
Target Start/End: Original strand, 45975675 - 45975753
Alignment:
Q  116 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 194  Q
    |||||||||||||||||||||||||||| |||| |||  ||  |||  ||||||||||||||| ||| || ||||||||    
T  45975675 tatttttgtataagctacaagctgttttcataagctatcttggagaatttatgaaaataagctgaaaacagcttatgaa 45975753  T

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Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 5592762 - 5592694
Alignment:
Q  124 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    ||||||||| ||| |||||| |||| ||||| | |||||||||||||||||||||  || |||||||||    
T  5592762 tataagctataagttgttttcataagctagtcttaagagcttatgaaaataagctggaaacaacttatg 5592694  T

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Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 159 - 214
Target Start/End: Original strand, 25479609 - 25479664
Alignment:
Q  159 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||||||||||||||||| ||| ||||| ||||| ||||| ||| |||||||||    
T  25479609 agagcttatgaaaataagctgaaaacaactaatgaacatgtcataatctattttca 25479664  T

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Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 38578509 - 38578596
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatg-aaaataagctaaaaccaacttatgaagatgt 199  Q
    |||||||||||||||||||| ||| |||||  |||||||| |   ||||| ||||| |||||||||| ||| ||||||||||| ||||    
T  38578509 aattatttttgtataagctataagttgtttacataaactattgagaagagtttatgaaaaataagctcaaaacaacttatgaatatgt 38578596  T

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Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 134 - 192
Target Start/End: Original strand, 16322852 - 16322910
Alignment:
Q  134 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    |||||||||| |||  ||| ||| ||||||||||| ||||||||||||| |||||||||    
T  16322852 aagctgttttcataggctattttgaagagcttatggaaataagctaaaaacaacttatg 16322910  T

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Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 123 - 188
Target Start/End: Complemental strand, 4700144 - 4700079
Alignment:
Q  123 gtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaact 188  Q
    |||||||||| || ||||||||||||||||   |  |||||||||||||||||||| ||| |||||    
T  4700144 gtataagctataaactgtttttataaactatcctggagagcttatgaaaataagctgaaaacaact 4700079  T

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Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 33546541 - 33546480
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaata 174  Q
    |||| |||||||||| |||  ||| ||||||||||| |||| || |||||||||||||||||    
T  33546541 aattctttttgtatatgctctaagttgtttttataagctagattgaagagcttatgaaaata 33546480  T

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Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 193
Target Start/End: Complemental strand, 836427 - 836347
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 193  Q
    |||| ||||||||||||||| ||| | ||||||||| ||| || | | | || |||||||| |||||||| ||||||||||    
T  836427 aattgtttttgtataagctataagttatttttataagctatttaagaaaactaatgaaaatgagctaaaaacaacttatga 836347  T

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Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 211
Target Start/End: Complemental strand, 16981978 - 16981926
Alignment:
Q  159 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 211  Q
    |||||||||  ||||||||||||| ||||||||| | ||||| ||||||||||    
T  16981978 agagcttatataaataagctaaaaacaacttatggacatgtcataaactattt 16981926  T

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Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 156 - 216
Target Start/End: Original strand, 20713681 - 20713741
Alignment:
Q  156 taaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttcaca 216  Q
    ||||||||||||||||||||| ||||| || |||||| | ||||| ||| |||||| ||||    
T  20713681 taaagagcttatgaaaataagataaaaacagcttatggacatgtcgtaagctatttccaca 20713741  T

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Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 113 - 214
Target Start/End: Complemental strand, 38170780 - 38170677
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttat--aaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatt 210  Q
    ||||||||| |||||||||| ||  ||||||| |  || ||| ||| ||||||||| ||||| ||||| ||| ||||||||||| ||||| ||| || ||    
T  38170780 aattattttcgtataagctataaattgtttttttgtaagctaatttgaagagcttaggaaaacaagctgaaaacaacttatgaacatgtcataagctgtt 38170681  T
Q  211 ttca 214  Q
    ||||    
T  38170680 ttca 38170677  T

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Target: chr2 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 113 - 200
Target Start/End: Complemental strand, 39236583 - 39236496
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtc 200  Q
    |||||||||| ||||| | | ||| |||||| ||||||||  ||||| ||||||| |||||||||||||| ||||||||||| |||||    
T  39236583 aattatttttatataaacaataagttgttttaataaactatcttaaaaagcttataaaaataagctaaaaacaacttatgaatatgtc 39236496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 43717177 - 43717123
Alignment:
Q  160 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    ||||||||||||||||||| ||| |||| |||||| ||||||||| || ||||||    
T  43717177 gagcttatgaaaataagctgaaaacaacctatgaaaatgtcctaagctgttttca 43717123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 1899923 - 1899992
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 182  Q
    |||| |||| |||||||||| ||  |||||| |||||||| | ||||||| |||| ||||||||||||||    
T  1899923 aattgttttcgtataagctataaaatgttttcataaactattctaaagagtttataaaaataagctaaaa 1899992  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 7103560 - 7103491
Alignment:
Q  124 tataagctacaagctgttttt-ataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    ||||||||| ||||||||||| |||| |||  ||| |||| || |||||||||||||||| |||||||||    
T  7103560 tataagctataagctgtttttcataagctatcttagagagtttgtgaaaataagctaaaaacaacttatg 7103491  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 194
Target Start/End: Complemental strand, 12313261 - 12313180
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 194  Q
    |||||||||||| ||||||||||  |||||  |||| |||  ||  |||||||||||||||||| | ||| |||||||||||    
T  12313261 aattatttttgtttaagctacaaattgtttacataagctatcttggagagcttatgaaaataaggtgaaatcaacttatgaa 12313180  T

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Target: chr5 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 134 - 214
Target Start/End: Complemental strand, 17258950 - 17258870
Alignment:
Q  134 aagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||||||| ||||||||   | ||||||||||||||||||||| ||| || |||||||| ||||| ||| |||||||||    
T  17258950 aagctgttttcataaactatcctgaagagcttatgaaaataagctgaaaacagcttatgaacatgtcataagctattttca 17258870  T

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Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 118 - 194
Target Start/End: Complemental strand, 41981948 - 41981872
Alignment:
Q  118 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 194  Q
    ||||||||||| ||| |||||||||| |||||||| |||  ||| |||| ||||||||||||||| || ||||||||    
T  41981948 tttttgtataaactataagctgttttcataaactatttttgagaacttacgaaaataagctaaaagcagcttatgaa 41981872  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 2568645 - 2568741
Alignment:
Q  118 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||| |||||||||| ||| |||||| |||| |||   |  |||||| |||||||||||||||||  |||||||||| ||||| ||| || ||||||    
T  2568645 ttttcgtataagctataagttgttttcataagctatcatggagagctaatgaaaataagctaaaaataacttatgaatatgtcataagctgttttca 2568741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 178
Target Start/End: Original strand, 6593290 - 6593346
Alignment:
Q  122 tgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    |||||| |||| |||||||||| |||| |||  ||| ||||||||||||||||||||    
T  6593290 tgtataggctataagctgttttgataagctaccttagagagcttatgaaaataagct 6593346  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 167 - 211
Target Start/End: Original strand, 41225088 - 41225132
Alignment:
Q  167 tgaaaataagctaaaaccaacttatgaagatgtcctaaactattt 211  Q
    ||||||||||||||||||| |||||||| |||||  |||||||||    
T  41225088 tgaaaataagctaaaaccagcttatgaacatgtcacaaactattt 41225132  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 3155585 - 3155650
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    |||| |||||||| ||||||||||||||||| ||||||||  || |||| || |||||||||||||    
T  3155585 aattgtttttgtacaagctacaagctgttttcataaactatcttgaagaactaatgaaaataagct 3155650  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 113 - 194
Target Start/End: Original strand, 25332756 - 25332838
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaa-agagcttatgaaaataagctaaaaccaacttatgaa 194  Q
    |||| ||||||||||||||  ||||| ||||||||| |||  |||  ||| |||||||||||||||| ||| |||||||||||    
T  25332756 aattgtttttgtataagctctaagctatttttataagctatcttatcagaacttatgaaaataagctgaaaacaacttatgaa 25332838  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Complemental strand, 53294202 - 53294137
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    |||| |||||||||| |||| ||| |||||||||||||||  ||| ||| |||||||||| |||||    
T  53294202 aattgtttttgtatatgctataagttgtttttataaactatattagagaacttatgaaaacaagct 53294137  T

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Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 134 - 178
Target Start/End: Complemental strand, 20105497 - 20105453
Alignment:
Q  134 aagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    ||||||||||||||||||| | | ||||||||||| |||||||||    
T  20105497 aagctgtttttataaactattctgaagagcttatgtaaataagct 20105453  T

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Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 124 - 192
Target Start/End: Complemental strand, 33534246 - 33534178
Alignment:
Q  124 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    ||||| ||||||| ||||||  |||| || |||  |||||||||||||||||||| ||| |||||||||    
T  33534246 tataatctacaagttgttttcgtaaattatttttgagagcttatgaaaataagctgaaaacaacttatg 33534178  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 55084523 - 55084483
Alignment:
Q  159 agagcttatgaaaataagctaaaaccaacttatgaagatgt 199  Q
    |||||||||||||||||||| |||||| |||||||| ||||    
T  55084523 agagcttatgaaaataagctgaaaccagcttatgaacatgt 55084483  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 118 - 214
Target Start/End: Original strand, 752956 - 753052
Alignment:
Q  118 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    ||||||||||||||| |||||||||| ||||||||  ||   |||| ||||||||| |||||||| || |||||  | ||||| |||||| ||||||    
T  752956 tttttgtataagctataagctgttttgataaactatcttggggagcatatgaaaattagctaaaaacagcttattgatatgtcataaactgttttca 753052  T

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Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 106 - 178
Target Start/End: Original strand, 39907778 - 39907850
Alignment:
Q  106 aaggtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    |||||| |||| ||||||||||||||| || ||||||| ||||||||  ||| ||| || |||||||||||||    
T  39907778 aaggttaaattgtttttgtataagctataaactgttttcataaactatcttagagaactaatgaaaataagct 39907850  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Original strand, 12110342 - 12110411
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 182  Q
    |||| |||| |||||||||| |||||||||| |||| |||  || |||| ||||||||||||| ||||||    
T  12110342 aattgttttggtataagctataagctgttttcataagctatcttgaagaacttatgaaaataatctaaaa 12110411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 113 - 182
Target Start/End: Complemental strand, 43694658 - 43694589
Alignment:
Q  113 aattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaa 182  Q
    |||| |||||||||| |||| ||||||||||||||| |||  |  |||| ||||||||||||||| ||||    
T  43694658 aattgtttttgtatatgctataagctgtttttataagctatatcgaagaacttatgaaaataagcaaaaa 43694589  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 116 - 192
Target Start/End: Complemental strand, 15075170 - 15075094
Alignment:
Q  116 tatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatg 192  Q
    ||||||| |||||| || ||| | |||| ||||||||  ||| |||||||||| ||||||||||||| || ||||||    
T  15075170 tatttttatataagttataagttattttcataaactaccttagagagcttatggaaataagctaaaaacagcttatg 15075094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 160 - 212
Target Start/End: Complemental strand, 33708484 - 33708432
Alignment:
Q  160 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactatttt 212  Q
    |||||||| || ||||||||||| ||||||||||| || || |||||||||||    
T  33708484 gagcttataaagataagctaaaagcaacttatgaaaatatcataaactatttt 33708432  T

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Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 160 - 204
Target Start/End: Original strand, 24785290 - 24785334
Alignment:
Q  160 gagcttatgaaaataagctaaaaccaacttatgaagatgtcctaa 204  Q
    |||||||||||||||| |||||| ||||||||||| |||||||||    
T  24785290 gagcttatgaaaataaactaaaaacaacttatgaaaatgtcctaa 24785334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 178
Target Start/End: Original strand, 30443881 - 30443940
Alignment:
Q  119 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagct 178  Q
    ||||||||| |||| |||||||||||||||||||  ||  ||| ||||||||||||||||    
T  30443881 ttttgtatatgctataagctgtttttataaactatattggagaacttatgaaaataagct 30443940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 40122827 - 40122740
Alignment:
Q  127 aagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactattttca 214  Q
    |||||| ||| ||||||||||| |||   |||| || | ||| ||||||||||||| ||||||||  ||||||| |||||||||||||    
T  40122827 aagctataagttgtttttataagctatcctaaaaagttaatggaaataagctaaaaacaacttatagagatgtcataaactattttca 40122740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 159 - 209
Target Start/End: Original strand, 24785233 - 24785283
Alignment:
Q  159 agagcttatgaaaataagctaaaaccaacttatgaagatgtcctaaactat 209  Q
    |||||||||| ||||||||||||| ||||||||||| ||||| ||| ||||    
T  24785233 agagcttatgtaaataagctaaaaacaacttatgaacatgtcataagctat 24785283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 118 - 195
Target Start/End: Complemental strand, 28622082 - 28622005
Alignment:
Q  118 tttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaag 195  Q
    ||||||| ||||||| |||||||||| ||||||||  ||  ||| ||||||||||||| || ||| || |||||||||    
T  28622082 tttttgtgtaagctataagctgttttcataaactatcttcgagaacttatgaaaataacctgaaaacagcttatgaag 28622005  T

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Target: scaffold0091 (Bit Score: 32; Significance: 0.000000008; HSPs: 1)
Name: scaffold0091
Description:

Target: scaffold0091; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 124 - 183
Target Start/End: Original strand, 6945 - 7004
Alignment:
Q  124 tataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaac 183  Q
    ||||||||| ||||||||||| ||| |||   | ||||||||||||||||||||||||||    
T  6945 tataagctataagctgtttttgtaagctatcatgaagagcttatgaaaataagctaaaac 7004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000008; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 119 - 194
Target Start/End: Complemental strand, 9109333 - 9109258
Alignment:
Q  119 ttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatgaa 194  Q
    |||||||||||||| |||||||||| || ||||| |||  ||| | |||||||||||| | ||| |||||||||||    
T  9109333 ttttgtataagctataagctgttttcattaactaatttggagaacctatgaaaataaggtgaaaacaacttatgaa 9109258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 163 - 194
Target Start/End: Original strand, 33737774 - 33737805
Alignment:
Q  163 cttatgaaaataagctaaaaccaacttatgaa 194  Q
    ||||||||||||||||||||||||||||||||    
T  33737774 cttatgaaaataagctaaaaccaacttatgaa 33737805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 159 - 199
Target Start/End: Complemental strand, 28641791 - 28641751
Alignment:
Q  159 agagcttatgaaaataagctaaaaccaacttatgaagatgt 199  Q
    |||||||||||||||||||||||| || |||||||| ||||    
T  28641791 agagcttatgaaaataagctaaaaacagcttatgaacatgt 28641751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 109 - 193
Target Start/End: Complemental strand, 35070559 - 35070475
Alignment:
Q  109 gtttaattatttttgtataagctacaagctgtttttataaactagtttaaagagcttatgaaaataagctaaaaccaacttatga 193  Q
    |||||||| |||||||| ||| || ||||||||||| ||| |||  ||  |||||||||||||||||| | ||| || |||||||    
T  35070559 gtttaattgtttttgtacaagttataagctgtttttgtaagctatgtttgagagcttatgaaaataagttgaaaacagcttatga 35070475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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