View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_low_39 (Length: 324)

Name: NF8926_low_39
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_low_39
NF8926_low_39
[»] chr4 (9 HSPs)
chr4 (35-93)||(4843420-4843478)
chr4 (262-310)||(4843602-4843650)
chr4 (262-310)||(5172029-5172077)
chr4 (35-72)||(5172102-5172139)
chr4 (262-310)||(5194658-5194706)
chr4 (215-253)||(4843542-4843580)
chr4 (1-35)||(5159213-5159247)
chr4 (1-38)||(4843341-4843378)
chr4 (148-182)||(5155446-5155480)


Alignment Details
Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 35 - 93
Target Start/End: Original strand, 4843420 - 4843478
Alignment:
Q  35 tgcaaagagtattatgtggagagtggcaaaacatattttttcaaagaaagagataagtc 93  Q
    |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  4843420 tgcaaagagtattatgtggagagtggcaaaccatattttttcaaagaaagagataagtc 4843478  T

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Target: chr4; HSP #2
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 310
Target Start/End: Original strand, 4843602 - 4843650
Alignment:
Q  262 aattaaagattgtaaactcattaacttagagcctctattgagaatatga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  4843602 aattaaagattgtaaactcattaacttagagcctctattgagaatatga 4843650  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 5172077 - 5172029
Alignment:
Q  262 aattaaagattgtaaactcattaacttagagcctctattgagaatatga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  5172077 aattaaagattgtaaactcattaacttagagcctctattgagaatatga 5172029  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 35 - 72
Target Start/End: Complemental strand, 5172139 - 5172102
Alignment:
Q  35 tgcaaagagtattatgtggagagtggcaaaacatattt 72  Q
    ||||||||||||||||||||||||||||||||||||||    
T  5172139 tgcaaagagtattatgtggagagtggcaaaacatattt 5172102  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 262 - 310
Target Start/End: Complemental strand, 5194706 - 5194658
Alignment:
Q  262 aattaaagattgtaaactcattaacttagagcctctattgagaatatga 310  Q
    ||||| |||||||||||||||||||||||||  ||||||||||||||||    
T  5194706 aattagagattgtaaactcattaacttagagtttctattgagaatatga 5194658  T

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Target: chr4; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 215 - 253
Target Start/End: Original strand, 4843542 - 4843580
Alignment:
Q  215 tatatactgtttattttgttctattttaattaatttact 253  Q
    |||||| ||||||||||||||||||||||||||||||||    
T  4843542 tatatattgtttattttgttctattttaattaatttact 4843580  T

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Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 5159247 - 5159213
Alignment:
Q  1 ctagacaaaatcgataaccatctttggatgagaat 35  Q
    |||||||||||||||||||||||||||||||||||    
T  5159247 ctagacaaaatcgataaccatctttggatgagaat 5159213  T

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Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4843341 - 4843378
Alignment:
Q  1 ctagacaaaatcgataaccatctttggatgagaatgca 38  Q
    ||||||||||||||||||||||||||||||| ||||||    
T  4843341 ctagacaaaatcgataaccatctttggatgaaaatgca 4843378  T

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Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 148 - 182
Target Start/End: Complemental strand, 5155480 - 5155446
Alignment:
Q  148 aaggtgaaattgaagttcacgaaagcaaaattagg 182  Q
    ||||||||||||||||||| |||||||||||||||    
T  5155480 aaggtgaaattgaagttcaagaaagcaaaattagg 5155446  T

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