View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_4 (Length: 650)
Name: NF8926_low_4
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 7 - 476
Target Start/End: Complemental strand, 434822 - 434350
Alignment:
| Q |
7 |
tttaagattaggg-ttttcgttgtcttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgtttttgt |
105 |
Q |
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||||||||||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
434822 |
tttaagattagggattttcgtcgtcttccaatttcatggatgtcgcccagattttcaaaggtagtttttcgcgtttgcttcagttaattagtgtttttgt |
434723 |
T |
|
| Q |
106 |
tagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcatt |
205 |
Q |
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| T |
434722 |
gagaattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcatt |
434623 |
T |
|
| Q |
206 |
gaatacaagggattcaaattaattgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaatt |
305 |
Q |
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| T |
434622 |
gaatacaagggattcaaattaattgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaatt |
434523 |
T |
|
| Q |
306 |
atggattaaggattaatatttgacatgttaacataaaatgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttagg |
405 |
Q |
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| T |
434522 |
atggattaaggattaatatttgacatgttaacataaaatgaagattgtgtaatccaaatatatactgtaatttgtttcaaattatgtactctagtttagg |
434423 |
T |
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| Q |
406 |
tcagttctttttcataagtataatttaagtc--nnnnnnnnnaagttcttttacaattgaggaagccatttcc |
476 |
Q |
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| T |
434422 |
tcagttctttttcctaagtataatttaagtcttttttttttaaagttcttttacaattgaggaagccatttcc |
434350 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 146; E-Value: 1e-76
Query Start/End: Original strand, 473 - 642
Target Start/End: Complemental strand, 434316 - 434147
Alignment:
| Q |
473 |
ttccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtc |
572 |
Q |
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|||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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| T |
434316 |
ttccctcagggagctttaatctcctggcaaaagtggaattttcttccacttgacccaagatgacagatttatgattaagacagtcaaaaaatccgaagtc |
434217 |
T |
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| Q |
573 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
642 |
Q |
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| T |
434216 |
aaggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtataatgtacatct |
434147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 117; E-Value: 3e-59
Query Start/End: Original strand, 229 - 393
Target Start/End: Complemental strand, 43485786 - 43485622
Alignment:
| Q |
229 |
tgaagattagttataccattgccattgaattgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaaggattaatatttga |
328 |
Q |
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| T |
43485786 |
tgaagattagttataccattgccattgaattgagctttagtctcaactgaatcaaatttacactgagctgtgtaattctggattaaggattaaaatttga |
43485687 |
T |
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| Q |
329 |
catgttaacataaaatgaagtttgtgtaatccaaatatatactgtaatttgtttcaaattatgta |
393 |
Q |
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| T |
43485686 |
catgttaccataaattgaagtttgtgtaagccaaatatatactgtaatttgattcaaattatgta |
43485622 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 475 - 642
Target Start/End: Original strand, 32938459 - 32938626
Alignment:
| Q |
475 |
ccctcaggtagctttaatctcctggcaaaattggaattttcttccacttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaa |
574 |
Q |
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|||||||| |||||| |||||||||||||| ||||| |||||| |||||||||||||||| ||||||||||| ||||| |||||||||| ||||||||| |
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| T |
32938459 |
ccctcagggagctttcatctcctggcaaaagtggaagcttcttctacttgacccaagatgatagatttatgataaagacggtgaaaaaatccgaagtcaa |
32938558 |
T |
|
| Q |
575 |
ggtttgtttttggttgttaaattgaaaacatttttccgtgttcgttcaaactggtatgatgtccatct |
642 |
Q |
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| T |
32938559 |
ggtttgtttttggttgttaaattgaaaacatttttccatgtttgttcaaactagtatgacgtacatct |
32938626 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 258 - 315
Target Start/End: Complemental strand, 47870681 - 47870624
Alignment:
| Q |
258 |
ttgggcgttagtctcaattgaatcaaattttcactgaaatgtgtaattatggattaag |
315 |
Q |
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|||||| ||||||||||||||||||||||||||||||| | ||||||| ||||||||| |
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| T |
47870681 |
ttgggctttagtctcaattgaatcaaattttcactgaattatgtaattctggattaag |
47870624 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 109 - 269
Target Start/End: Original strand, 17512780 - 17512942
Alignment:
| Q |
109 |
aattaaattcgattcatctaagattatggatccaaattcataaattatgcagttagttatacctttgtcattgagtctcaattgacttcgactcattgaa |
208 |
Q |
| |
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|||| ||||| |||||| |||||||| || | |||||||||||||| | | |||||| |||||||||||||||||||||||||| || ||| |||||| |
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| T |
17512780 |
aattgaattcaattcatttaagattagggcttcaaattcataaattctacgattagttgtacctttgtcattgagtctcaattgattttaacttattgaa |
17512879 |
T |
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| Q |
209 |
tacaagggattcaaattaattgaagattag--ttataccattgccattgaattgggcgttagt |
269 |
Q |
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| T |
17512880 |
gccaagggattcaatctcattgaacattagttttgtaccattgccattgaattaggcgttagt |
17512942 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 30 - 103
Target Start/End: Original strand, 17512681 - 17512754
Alignment:
| Q |
30 |
cttccaatttcatggatgtcgcccagatttacaaaggtagtttttcgcgtttgcttcagttaattagtgttttt |
103 |
Q |
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||||||||||||||||||||||| |||||| |||| ||||||||||||||||| |||||||| ||| ||||||| |
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| T |
17512681 |
cttccaatttcatggatgtcgcctagattttcaaatgtagtttttcgcgtttgtttcagttagttattgttttt |
17512754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 43; Significance: 0.000000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 520 - 578
Target Start/End: Original strand, 24524401 - 24524459
Alignment:
| Q |
520 |
acttgacccaagatgacagatttatgattaagacagtgaaaaaattcgaagtcaaggtt |
578 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||| |
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| T |
24524401 |
acttgacccaagatgacagattcatgattaagacagtgaagaaatctgaagtcaaggtt |
24524459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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