View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_low_41 (Length: 311)

Name: NF8926_low_41
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_low_41
NF8926_low_41
[»] chr1 (31 HSPs)
chr1 (150-296)||(16297072-16297218)
chr1 (85-154)||(16297396-16297465)
chr1 (1-38)||(4470349-4470386)
chr1 (1-37)||(8200087-8200123)
chr1 (1-37)||(33358182-33358218)
chr1 (1-37)||(35136844-35136880)
chr1 (1-37)||(36577447-36577483)
chr1 (1-37)||(44789178-44789214)
chr1 (1-37)||(48220167-48220203)
chr1 (1-37)||(48624884-48624920)
chr1 (1-36)||(30658883-30658918)
chr1 (1-36)||(45065925-45065960)
chr1 (1-38)||(13489661-13489698)
chr1 (1-42)||(47820536-47820577)
chr1 (1-37)||(756856-756892)
chr1 (1-37)||(3603111-3603147)
chr1 (1-37)||(7128118-7128154)
chr1 (1-37)||(8411753-8411789)
chr1 (1-37)||(10890081-10890117)
chr1 (1-37)||(11097919-11097955)
chr1 (1-37)||(15705097-15705133)
chr1 (1-37)||(18336158-18336194)
chr1 (1-37)||(26585914-26585950)
chr1 (1-37)||(34040535-34040571)
chr1 (1-37)||(43893257-43893293)
chr1 (1-37)||(44632540-44632576)
chr1 (1-37)||(46082156-46082192)
chr1 (1-37)||(46911293-46911329)
chr1 (1-37)||(49241528-49241564)
chr1 (1-37)||(50781593-50781629)
chr1 (1-37)||(52362482-52362518)
[»] chr4 (18 HSPs)
chr4 (1-43)||(51887657-51887699)
chr4 (1-37)||(14010153-14010189)
chr4 (1-37)||(22819649-22819685)
chr4 (1-37)||(28657464-28657500)
chr4 (1-37)||(31657658-31657694)
chr4 (1-37)||(43769723-43769759)
chr4 (1-36)||(2401611-2401646)
chr4 (1-44)||(14593821-14593864)
chr4 (4-37)||(4915711-4915744)
chr4 (1-34)||(14527647-14527680)
chr4 (4-37)||(21617183-21617216)
chr4 (4-37)||(39345018-39345051)
chr4 (4-37)||(51573670-51573703)
chr4 (1-34)||(54802699-54802732)
chr4 (1-37)||(14451393-14451429)
chr4 (1-37)||(17683359-17683395)
chr4 (1-37)||(19720676-19720712)
chr4 (1-37)||(30079846-30079882)
[»] chr2 (26 HSPs)
chr2 (1-43)||(39449152-39449194)
chr2 (1-34)||(36212082-36212115)
chr2 (1-37)||(3012869-3012905)
chr2 (1-37)||(6646835-6646871)
chr2 (1-37)||(12889867-12889903)
chr2 (4-44)||(18723587-18723627)
chr2 (1-37)||(30977889-30977925)
chr2 (1-37)||(35589422-35589458)
chr2 (1-37)||(36802896-36802932)
chr2 (4-43)||(44712027-44712066)
chr2 (1-35)||(14233754-14233788)
chr2 (1-43)||(42866756-42866798)
chr2 (1-34)||(9194432-9194465)
chr2 (1-38)||(13765399-13765436)
chr2 (1-42)||(26277102-26277143)
chr2 (4-37)||(29711979-29712012)
chr2 (1-34)||(32972930-32972963)
chr2 (1-37)||(670502-670538)
chr2 (1-37)||(2841834-2841870)
chr2 (1-37)||(2971838-2971874)
chr2 (1-37)||(6999103-6999139)
chr2 (4-36)||(13347853-13347885)
chr2 (1-37)||(29051688-29051724)
chr2 (1-37)||(37257449-37257485)
chr2 (1-37)||(39449267-39449303)
chr2 (1-37)||(42678761-42678797)
[»] scaffold0100 (1 HSPs)
scaffold0100 (1-37)||(44786-44822)
[»] chr8 (17 HSPs)
chr8 (1-37)||(3946240-3946276)
chr8 (1-37)||(16872191-16872227)
chr8 (1-37)||(29991412-29991448)
chr8 (1-37)||(30439529-30439565)
chr8 (1-37)||(34718115-34718151)
chr8 (1-37)||(41541869-41541905)
chr8 (1-36)||(32954853-32954888)
chr8 (3-37)||(5277741-5277775)
chr8 (1-34)||(9549234-9549267)
chr8 (1-37)||(1633925-1633961)
chr8 (1-37)||(4658298-4658334)
chr8 (1-37)||(5771911-5771947)
chr8 (1-37)||(11223894-11223930)
chr8 (1-37)||(12707149-12707185)
chr8 (1-37)||(16966785-16966821)
chr8 (1-37)||(37657001-37657037)
chr8 (1-37)||(39453442-39453478)
[»] chr7 (18 HSPs)
chr7 (1-37)||(13729726-13729762)
chr7 (1-37)||(37899323-37899359)
chr7 (1-36)||(3062343-3062378)
chr7 (1-36)||(7817650-7817685)
chr7 (4-37)||(37899251-37899284)
chr7 (1-50)||(39331973-39332021)
chr7 (1-37)||(3937145-3937181)
chr7 (1-37)||(11352997-11353033)
chr7 (1-37)||(16980297-16980333)
chr7 (1-37)||(21347340-21347376)
chr7 (1-37)||(21559798-21559834)
chr7 (1-37)||(33180745-33180781)
chr7 (1-37)||(33224835-33224871)
chr7 (1-37)||(35192309-35192345)
chr7 (1-37)||(35293128-35293164)
chr7 (1-37)||(41893915-41893951)
chr7 (1-37)||(42663084-42663120)
chr7 (1-37)||(43573578-43573614)
[»] chr6 (11 HSPs)
chr6 (1-37)||(6531218-6531254)
chr6 (1-37)||(15318223-15318259)
chr6 (1-37)||(28748124-28748160)
chr6 (1-37)||(33421760-33421796)
chr6 (1-37)||(754473-754509)
chr6 (1-37)||(5028289-5028325)
chr6 (1-37)||(5327627-5327663)
chr6 (1-37)||(15368858-15368894)
chr6 (1-37)||(20822903-20822939)
chr6 (1-37)||(32459552-32459588)
chr6 (1-37)||(35213596-35213632)
[»] chr5 (16 HSPs)
chr5 (1-37)||(8920078-8920114)
chr5 (1-37)||(30640790-30640826)
chr5 (3-37)||(21922182-21922216)
chr5 (1-34)||(1839368-1839401)
chr5 (4-37)||(25871484-25871517)
chr5 (1-37)||(3771041-3771077)
chr5 (1-37)||(4430971-4431007)
chr5 (1-37)||(6517712-6517748)
chr5 (1-37)||(8675468-8675504)
chr5 (1-37)||(9977119-9977155)
chr5 (1-37)||(14324003-14324039)
chr5 (1-37)||(15953068-15953104)
chr5 (1-37)||(23126378-23126414)
chr5 (1-37)||(26660446-26660482)
chr5 (1-37)||(26932038-26932074)
chr5 (1-37)||(43441738-43441774)
[»] chr3 (19 HSPs)
chr3 (1-37)||(21196124-21196160)
chr3 (1-37)||(24482998-24483034)
chr3 (1-37)||(49761319-49761355)
chr3 (1-37)||(50207005-50207041)
chr3 (1-40)||(55399996-55400035)
chr3 (1-39)||(3347157-3347195)
chr3 (1-42)||(2482709-2482750)
chr3 (1-34)||(31376800-31376833)
chr3 (1-42)||(54195346-54195387)
chr3 (1-37)||(10207008-10207044)
chr3 (1-37)||(21005199-21005235)
chr3 (1-37)||(26672412-26672448)
chr3 (1-37)||(33976429-33976465)
chr3 (1-37)||(37927240-37927276)
chr3 (1-37)||(44677519-44677555)
chr3 (1-37)||(45054974-45055010)
chr3 (1-37)||(49363286-49363322)
chr3 (1-37)||(53718049-53718085)
chr3 (1-37)||(54773789-54773825)
[»] scaffold0005 (1 HSPs)
scaffold0005 (1-44)||(223514-223557)
[»] scaffold0532 (1 HSPs)
scaffold0532 (1-37)||(10964-11000)
[»] scaffold0321 (1 HSPs)
scaffold0321 (1-37)||(19636-19672)
[»] scaffold0095 (1 HSPs)
scaffold0095 (1-37)||(16262-16298)
[»] scaffold0034 (1 HSPs)
scaffold0034 (1-37)||(101941-101977)


Alignment Details
Target: chr1 (Bit Score: 131; Significance: 6e-68; HSPs: 31)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 150 - 296
Target Start/End: Complemental strand, 16297218 - 16297072
Alignment:
Q  150 gtataatataaataatttggggctaaagttgagacagctgaaataatttggggctaaagtcctgaccattatttcctccattgactagattttatgtaat 249  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| |||||||    
T  16297218 gtataatataaataatttggggctaaaattgagacagctgaaataatttggggctaaagtcctgaccattgtttactccattgactagatttcatgtaat 16297119  T
Q  250 gtttgaaagtttgagatgcctaataaatttcatcatattgggaaaga 296  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  16297118 gtttgaaagtttgagatgcctaataaatttcatcatattgggaaaga 16297072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 85 - 154
Target Start/End: Complemental strand, 16297465 - 16297396
Alignment:
Q  85 ttccaaattcaattaaccataccctagtactttacaattcttgacaccaacattaagcatatattgtata 154  Q
    ||||||||||  |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||    
T  16297465 ttccaaattcggttaaccataccctagtactttacaattcttgacaccaacattgagcatatattatata 16297396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 4470349 - 4470386
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctcc 38  Q
    |||||||||||||||||||||||| |||||||||||||    
T  4470349 aagttgtcacaaaatggatgttcaaatatcatttctcc 4470386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8200123 - 8200087
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8200123 aagttgtcacaaaatggatgttcaaatatcatttctc 8200087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33358182 - 33358218
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33358182 aagttgtcacaaaatggatgttcaaatatcatttctc 33358218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35136880 - 35136844
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35136880 aagttgtcacaaaatggatgttcaaatatcatttctc 35136844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 36577447 - 36577483
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36577447 aagttgtcacaaaatggatgttcaaatatcatttctc 36577483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44789178 - 44789214
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44789178 aagttgtcacaaaatggatgttcaaatatcatttctc 44789214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 48220167 - 48220203
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48220167 aagttgtcacaaaatggatgttcaaatatcatttctc 48220203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 48624920 - 48624884
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  48624920 aagttgtcacaaaatggatgttcaaatatcatttctc 48624884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30658883 - 30658918
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  30658883 aagttgtcacaaaatggatgttcaaatatcatttct 30658918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 45065925 - 45065960
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  45065925 aagttgtcacaaaatggatgttcaaatatcatttct 45065960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13489698 - 13489661
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctcc 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13489698 aagttgtcataaaatggatgttcaaatatcatttctcc 13489661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 47820536 - 47820577
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattt 42  Q
    ||||||||| |||||||||||||| |||||||||||| ||||    
T  47820536 aagttgtcataaaatggatgttcaaatatcatttctcaattt 47820577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 756892 - 756856
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  756892 aagttgtcactaaatggatgttcaaatatcatttctc 756856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3603147 - 3603111
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  3603147 aagttgtcactaaatggatgttcaaatatcatttctc 3603111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 7128154 - 7128118
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  7128154 aagttgtcactaaatggatgttcaaatatcatttctc 7128118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8411753 - 8411789
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  8411753 aagttgtcactaaatggatgttcaaatatcatttctc 8411789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10890081 - 10890117
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  10890081 aagttgtcataaaatggatgttcaaatatcatttctc 10890117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11097919 - 11097955
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  11097919 aagttgtcacaaaatggatgtacaaatatcatttctc 11097955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15705097 - 15705133
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  15705097 aagttgtcataaaatggatgttcaaatatcatttctc 15705133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 18336194 - 18336158
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  18336194 aagttgtcacaaaatgaatgttcaaatatcatttctc 18336158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26585914 - 26585950
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  26585914 aagttgtcactaaatggatgttcaaatatcatttctc 26585950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 34040535 - 34040571
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  34040535 aagttatcacaaaatggatgttcaaatatcatttctc 34040571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43893293 - 43893257
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  43893293 aagttgtgacaaaatggatgttcaaatatcatttctc 43893257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44632576 - 44632540
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  44632576 aagttgtcaccaaatggatgttcaaatatcatttctc 44632540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 46082156 - 46082192
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  46082156 aagttgtcactaaatggatgttcaaatatcatttctc 46082192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 46911329 - 46911293
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  46911329 aagttgtcacaaaatggatgttgaaatatcatttctc 46911293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49241528 - 49241564
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||| |||||||||| ||||||||||||    
T  49241528 aagttgtcacaaagtggatgttcaaatatcatttctc 49241564  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50781593 - 50781629
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  50781593 aagttgtcataaaatggatgttcaaatatcatttctc 50781629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 52362518 - 52362482
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  52362518 aagttgtcataaaatggatgttcaaatatcatttctc 52362482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000001; HSPs: 18)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 51887699 - 51887657
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccatttt 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  51887699 aagttgtcacaaaatggatgttcaaatatcatttctcaatttt 51887657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14010153 - 14010189
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  14010153 aagttgtcacaaaatggatgttcaaatatcatttctc 14010189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 22819685 - 22819649
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  22819685 aagttgtcacaaaatggatgttcaaatatcatttctc 22819649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 28657464 - 28657500
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28657464 aagttgtcacaaaatggatgttcaaatatcatttctc 28657500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 31657694 - 31657658
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  31657694 aagttgtcacaaaatggatgttcaaatatcatttctc 31657658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43769759 - 43769723
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  43769759 aagttgtcacaaaatggatgttcaaatatcatttctc 43769723  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 2401646 - 2401611
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  2401646 aagttgtcacaaaatggatgttcaaatatcatttct 2401611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Complemental strand, 14593864 - 14593821
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattttt 44  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||    
T  14593864 aagttgtcacaaaatggatattcaaatatcatttctcaattttt 14593821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 4915711 - 4915744
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  4915711 ttgtcacaaaatggatgttcaaatatcatttctc 4915744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 14527680 - 14527647
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  14527680 aagttgtcacaaaatggatgttcaaatatcattt 14527647  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 21617216 - 21617183
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  21617216 ttgtcacaaaatggatgttcaaatatcatttctc 21617183  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 39345018 - 39345051
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  39345018 ttgtcacaaaatggatgttcaaatatcatttctc 39345051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 51573670 - 51573703
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  51573670 ttgtcacaaaatggatgttcaaatatcatttctc 51573703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 54802699 - 54802732
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  54802699 aagttgtcacaaaatggatgttcaaatatcattt 54802732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 14451429 - 14451393
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  14451429 aagttgtcactaaatggatgttcaaatatcatttctc 14451393  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17683395 - 17683359
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  17683395 aagttgtcataaaatggatgttcaaatatcatttctc 17683359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 19720676 - 19720712
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  19720676 aagttgtcacaaaatggatgtgcaaatatcatttctc 19720712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30079882 - 30079846
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  30079882 aagttgtcactaaatggatgttcaaatatcatttctc 30079846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 26)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 43
Target Start/End: Original strand, 39449152 - 39449194
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccatttt 43  Q
    |||||||||||||||||||||||| |||||||||||| |||||    
T  39449152 aagttgtcacaaaatggatgttcaaatatcatttctctatttt 39449194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 36212082 - 36212115
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    ||||||||||||||||||||||||||||||||||    
T  36212082 aagttgtcacaaaatggatgttcagatatcattt 36212115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3012869 - 3012905
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3012869 aagttgtcacaaaatggatgttcaaatatcatttctc 3012905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6646871 - 6646835
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6646871 aagttgtcacaaaatggatgttcaaatatcatttctc 6646835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12889867 - 12889903
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  12889867 aagttgtcacaaaatggatgttcatatatcatttctc 12889903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 4 - 44
Target Start/End: Complemental strand, 18723627 - 18723587
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctccattttt 44  Q
    ||||||||||||||||||||| ||||||||||||| |||||    
T  18723627 ttgtcacaaaatggatgttcaaatatcatttctcctttttt 18723587  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30977925 - 30977889
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30977925 aagttgtcacaaaatggatgttcaaatatcatttctc 30977889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35589422 - 35589458
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  35589422 aagttgtcacaaaatggatgttcaaatatcatttctc 35589458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 36802932 - 36802896
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  36802932 aagttgtcacaaaatggatgttcaaatatcatttctc 36802896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 4 - 43
Target Start/End: Original strand, 44712027 - 44712066
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctccatttt 43  Q
    ||||||||||||||||||||| |||||||||||| |||||    
T  44712027 ttgtcacaaaatggatgttcaaatatcatttctcaatttt 44712066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Original strand, 14233754 - 14233788
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttc 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  14233754 aagttgtcacaaaatggatgttcaaatatcatttc 14233788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 43
Target Start/End: Complemental strand, 42866798 - 42866756
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccatttt 43  Q
    |||||||||||||||||| ||||| ||||||||||||| ||||    
T  42866798 aagttgtcacaaaatggacgttcaaatatcatttctccttttt 42866756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 9194465 - 9194432
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9194465 aagttgtcacaaaatggatgttcaaatatcattt 9194432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 13765436 - 13765399
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctcc 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  13765436 aagttgtcataaaatggatgttcaaatatcatttctcc 13765399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 26277143 - 26277102
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattt 42  Q
    |||||||||| ||||||||||||| |||||||||||| ||||    
T  26277143 aagttgtcactaaatggatgttcaaatatcatttctctattt 26277102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Complemental strand, 29712012 - 29711979
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  29712012 ttgtcacaaaatggatgttcaaatatcatttctc 29711979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 32972930 - 32972963
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  32972930 aagttgtcacaaaatggatgttcaaatatcattt 32972963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 670502 - 670538
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  670502 aagttgtcactaaatggatgttcaaatatcatttctc 670538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 2841870 - 2841834
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||| ||| ||||||||||||    
T  2841870 aagttgtcacaaaatggatgatcaaatatcatttctc 2841834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 2971838 - 2971874
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||| ||||||    
T  2971838 aagttgtcacaaaatggatgttcaaatatcttttctc 2971874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6999103 - 6999139
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  6999103 aagttgtcataaaatggatgttcaaatatcatttctc 6999139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 13347853 - 13347885
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttct 36  Q
    ||||||||||||||||||||| |||||||||||    
T  13347853 ttgtcacaaaatggatgttcaaatatcatttct 13347885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 29051688 - 29051724
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  29051688 aagttgtcactaaatggatgttcaaatatcatttctc 29051724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37257485 - 37257449
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  37257485 aagttgtcactaaatggatgttcaaatatcatttctc 37257449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39449303 - 39449267
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  39449303 aagttgtcacaaaatggatattcaaatatcatttctc 39449267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42678797 - 42678761
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  42678797 aagttgtcactaaatggatgttcaaatatcatttctc 42678761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0100 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0100
Description:

Target: scaffold0100; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 44822 - 44786
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  44822 aagttgtcacaaaatggatgttcaaatatcatttctc 44786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 33; Significance: 0.000000002; HSPs: 17)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 3946276 - 3946240
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  3946276 aagttgtcacaaaatggatgttcaaatatcatttctc 3946240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 16872191 - 16872227
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  16872191 aagttgtcacaaaatggatgttcaaatatcatttctc 16872227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29991448 - 29991412
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  29991448 aagttgtcacaaaatggatgttcaaatatcatttctc 29991412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 30439529 - 30439565
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30439529 aagttgtcacaaaatggatgttcaaatatcatttctc 30439565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 34718151 - 34718115
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  34718151 aagttgtcacaaaatggatgttcaaatatcatttctc 34718115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41541905 - 41541869
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  41541905 aagttgtcacaaaatggatgttcaaatatcatttctc 41541869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 32954888 - 32954853
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  32954888 aagttgtcacaaaatggatgttcaaatatcatttct 32954853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 5277741 - 5277775
Alignment:
Q  3 gttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  5277741 gttgtcacaaaatggatgttcaaatatcatttctc 5277775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 9549234 - 9549267
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  9549234 aagttgtcacaaaatggatgttcaaatatcattt 9549267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 1633925 - 1633961
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  1633925 aagttgtcactaaatggatgttcaaatatcatttctc 1633961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4658298 - 4658334
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  4658298 aagttgtcataaaatggatgttcaaatatcatttctc 4658334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5771911 - 5771947
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||| |||||| ||||||||||||    
T  5771911 aagttgtcacaaaatggttgttcaaatatcatttctc 5771947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11223894 - 11223930
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  11223894 aagttgtcacaaaatggatgtacaaatatcatttctc 11223930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 12707185 - 12707149
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  12707185 aagttgtcataaaatggatgttcaaatatcatttctc 12707149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16966821 - 16966785
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  16966821 aagttgtcactaaatggatgttcaaatatcatttctc 16966785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37657037 - 37657001
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  37657037 aagttgtcactaaatggatgttcaaatatcatttctc 37657001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 39453442 - 39453478
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  39453442 aagttgtcacaaaatggatgtccaaatatcatttctc 39453478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 13729762 - 13729726
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  13729762 aagttgtcacaaaatggatgttcaaatatcatttctc 13729726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 37899359 - 37899323
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  37899359 aagttgtcacaaaatggatgttcaaatatcatttctc 37899323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3062378 - 3062343
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  3062378 aagttgtcacaaaatggatgttcaaatatcatttct 3062343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7817685 - 7817650
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttct 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7817685 aagttgtcacaaaatggatgttcaaatatcatttct 7817650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 37899251 - 37899284
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  37899251 ttgtcacaaaatggatgttcaaatatcatttctc 37899284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 50
Target Start/End: Complemental strand, 39332021 - 39331973
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccatttttgaagca 50  Q
    |||||||||| ||||||||||||| ||||||||||| ||||||| |||||    
T  39332021 aagttgtcactaaatggatgttcaaatatcatttct-cattttttaagca 39331973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3937145 - 3937181
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  3937145 aagttgtcacaaaatagatgttcaaatatcatttctc 3937181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11352997 - 11353033
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  11352997 aagttgtcacaaaattgatgttcaaatatcatttctc 11353033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16980333 - 16980297
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  16980333 aagttgtcacaaaatgaatgttcaaatatcatttctc 16980297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21347340 - 21347376
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||| |||| ||||||||||||    
T  21347340 aagttgtcacaaaatggatcttcaaatatcatttctc 21347376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21559834 - 21559798
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||| |||||||||||| ||||||||||||    
T  21559834 aagttgtcacagaatggatgttcaaatatcatttctc 21559798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33180745 - 33180781
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  33180745 aagttgtcacaaaatgaatgttcaaatatcatttctc 33180781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33224871 - 33224835
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  33224871 aagttgtcacaaaatagatgttcaaatatcatttctc 33224835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35192309 - 35192345
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| |||| |||||||    
T  35192309 aagttgtcacaaaatggatgttcaaatattatttctc 35192345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 35293164 - 35293128
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  35293164 aagttgtcaaaaaatggatgttcaaatatcatttctc 35293128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41893951 - 41893915
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  41893951 aagttgtcataaaatggatgttcaaatatcatttctc 41893915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 42663120 - 42663084
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  42663120 aagttgtcacaaaatggatgtacaaatatcatttctc 42663084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 43573578 - 43573614
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  43573578 aagttgtcacaaaatagatgttcaaatatcatttctc 43573614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 6531218 - 6531254
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  6531218 aagttgtcacaaaatggatgttcaaatatcatttctc 6531254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15318223 - 15318259
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  15318223 aagttgtcacaaaatggatgttcaaatatcatttctc 15318259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 28748160 - 28748124
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  28748160 aagttgtcacaaaatggatgttcaaatatcatttctc 28748124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 33421796 - 33421760
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  33421796 aagttgtcacaaaatggatgttcaaatatcatttctc 33421760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 754473 - 754509
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  754473 aagttgtcacaaaatgaatgttcaaatatcatttctc 754509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5028289 - 5028325
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  5028289 aagttgtcacaaaatggatgtttaaatatcatttctc 5028325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 5327627 - 5327663
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  5327627 aagttgtcactaaatggatgttcaaatatcatttctc 5327663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15368858 - 15368894
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  15368858 aagttgttacaaaatggatgttcaaatatcatttctc 15368894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 20822903 - 20822939
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  20822903 aagttgtcataaaatggatgttcaaatatcatttctc 20822939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 32459552 - 32459588
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  32459552 aagttgtcataaaatggatgttcaaatatcatttctc 32459588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 35213596 - 35213632
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  35213596 aagttgtcacaaaatagatgttcaaatatcatttctc 35213632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 33; Significance: 0.000000002; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 8920114 - 8920078
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  8920114 aagttgtcacaaaatggatgttcaaatatcatttctc 8920078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 30640826 - 30640790
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  30640826 aagttgtcacaaaatggatgttcaaatatcatttctc 30640790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 3 - 37
Target Start/End: Original strand, 21922182 - 21922216
Alignment:
Q  3 gttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||| ||||||||||||    
T  21922182 gttgtcacaaaatggatgttcaaatatcatttctc 21922216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 1839368 - 1839401
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  1839368 aagttgtcacaaaatggatgttcaaatatcattt 1839401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 37
Target Start/End: Original strand, 25871484 - 25871517
Alignment:
Q  4 ttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| ||||||||||||    
T  25871484 ttgtcacaaaatggatgttcaaatatcatttctc 25871517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 3771041 - 3771077
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||| ||| |||||||||||||||    
T  3771041 aagttgtcacaaaatggttgtacagatatcatttctc 3771077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4430971 - 4431007
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  4430971 aagttgtcactaaatggatgttcaaatatcatttctc 4431007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6517748 - 6517712
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  6517748 aagttgtcataaaatggatgttcaaatatcatttctc 6517712  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 8675468 - 8675504
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||| |||||||||||||||||| ||||||||||||    
T  8675468 aagttatcacaaaatggatgttcaaatatcatttctc 8675504  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 9977155 - 9977119
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  9977155 aagttgtcactaaatggatgttcaaatatcatttctc 9977119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 14324003 - 14324039
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  14324003 aagttgtcacaaaatggatgtgcaaatatcatttctc 14324039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 15953068 - 15953104
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  15953068 aagttgtcacaaaatagatgttcaaatatcatttctc 15953104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 23126378 - 23126414
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  23126378 aagttgtcactaaatggatgttcaaatatcatttctc 23126414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26660446 - 26660482
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  26660446 aagttgtcacaaaatggatgtacaaatatcatttctc 26660482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 26932038 - 26932074
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  26932038 aagttgtcacaaaatggatgtacaaatatcatttctc 26932074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 43441774 - 43441738
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  43441774 aagttgttacaaaatggatgttcaaatatcatttctc 43441738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 21196160 - 21196124
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  21196160 aagttgtcacaaaatggatgttcaaatatcatttctc 21196124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 24482998 - 24483034
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  24482998 aagttgtcacaaaatggatgttcaaatatcatttctc 24483034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 49761355 - 49761319
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  49761355 aagttgtcacaaaatggatgttcaaatatcatttctc 49761319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 50207005 - 50207041
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  50207005 aagttgtcacaaaatggatgttcaaatatcatttctc 50207041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 55400035 - 55399996
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccat 40  Q
    ||||||||| |||||||||||||| |||||||||||||||    
T  55400035 aagttgtcataaaatggatgttcaaatatcatttctccat 55399996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 3347157 - 3347195
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctcca 39  Q
    ||||| |||||||||||||||||| ||||||||||||||    
T  3347157 aagttatcacaaaatggatgttcaaatatcatttctcca 3347195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Original strand, 2482709 - 2482750
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattt 42  Q
    ||||||||||||||||||||| || |||||||||||| ||||    
T  2482709 aagttgtcacaaaatggatgtacaaatatcatttctcaattt 2482750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 31376800 - 31376833
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcattt 34  Q
    |||||||||||||||||||||||| |||||||||    
T  31376800 aagttgtcacaaaatggatgttcaaatatcattt 31376833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 42
Target Start/End: Complemental strand, 54195387 - 54195346
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattt 42  Q
    |||||||||| ||||||||||||| |||||||||||| ||||    
T  54195387 aagttgtcactaaatggatgttcaaatatcatttctctattt 54195346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 10207008 - 10207044
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  10207008 aagttgtcactaaatggatgttcaaatatcatttctc 10207044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 21005199 - 21005235
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||| |||||||| ||||||||||||    
T  21005199 aagttgtcacaaaatagatgttcaaatatcatttctc 21005235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 26672448 - 26672412
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  26672448 aagttgtcacaaaatgaatgttcaaatatcatttctc 26672412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 33976429 - 33976465
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||| |||||||||||||||| ||||||||||||    
T  33976429 aagttgttacaaaatggatgttcaaatatcatttctc 33976465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 37927240 - 37927276
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  37927240 aagttgtcaccaaatggatgttcaaatatcatttctc 37927276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 44677519 - 44677555
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  44677519 aagttgtcactaaatggatgttcaaatatcatttctc 44677555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 45055010 - 45054974
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| |||||||||||||| ||||||||||||    
T  45055010 aagttgtcagaaaatggatgttcaaatatcatttctc 45054974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 49363286 - 49363322
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  49363286 aagttgtcactaaatggatgttcaaatatcatttctc 49363322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 53718085 - 53718049
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||||||||||||||| | ||||||||||||    
T  53718085 aagttgtcacaaaatggatgtttaaatatcatttctc 53718049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 54773789 - 54773825
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  54773789 aagttgtcactaaatggatgttcaaatatcatttctc 54773825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0005 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: scaffold0005
Description:

Target: scaffold0005; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 44
Target Start/End: Original strand, 223514 - 223557
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctccattttt 44  Q
    ||||||||||||||||||| |||| |||||||||||| ||||||    
T  223514 aagttgtcacaaaatggatattcaaatatcatttctcaattttt 223557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0532 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0532
Description:

Target: scaffold0532; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 11000 - 10964
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||| ||||||||||||||| ||||||||||||    
T  11000 aagttgtcccaaaatggatgttcaaatatcatttctc 10964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 19672 - 19636
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    |||||||||| ||||||||||||| ||||||||||||    
T  19672 aagttgtcactaaatggatgttcaaatatcatttctc 19636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 16298 - 16262
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||||||||||||||| || ||||||||||||    
T  16298 aagttgtcacaaaatggatgtccaaatatcatttctc 16262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 101941 - 101977
Alignment:
Q  1 aagttgtcacaaaatggatgttcagatatcatttctc 37  Q
    ||||||||| ||||||| |||||||||||||||||||    
T  101941 aagttgtcaaaaaatggttgttcagatatcatttctc 101977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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