View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_45 (Length: 305)
Name: NF8926_low_45
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_45 |
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Alignment Details
Target: chr8 (Bit Score: 234; Significance: 1e-129; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 16 - 281
Target Start/End: Complemental strand, 42927775 - 42927510
Alignment:
| Q |
16 |
acatcacaagtcgagtgaagaagatgatgaagttaaattaccaaaacaaaaaggaaaatgtaattttatggtgagatctacattaccctttgatgaattg |
115 |
Q |
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| T |
42927775 |
acatcacaagtcgagtgaagaagatgatgaagttaaattatcaaaacaaaaaggaaaatgtaatttcatggtgagatctacattaccctttgatgaattg |
42927676 |
T |
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| Q |
116 |
agtgtaatttaatcatcactaatgacaaataatatttgtttaacgaaagagatagatattatatgctgaatgaaaaagatgaaaaagtttttaagataag |
215 |
Q |
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| T |
42927675 |
agtgtaatttaattatcactaatgataaataatatttgtttaacaaaagagatagatattatatgttgaatgaagaagatgaaaaagtttttaagataaa |
42927576 |
T |
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| Q |
216 |
aatgataacaaaaaattatatggatgaaacctacattatacccttgagaaaatggggtaatttggt |
281 |
Q |
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| T |
42927575 |
aatgataacaaaaaattatatggatgaaacctacattatacccttgagaaaatggggtaatttggt |
42927510 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 53 - 127
Target Start/End: Complemental strand, 42927893 - 42927819
Alignment:
| Q |
53 |
ttaccaaaacaaaaaggaaaatgtaattttatggtgagatctacattaccctttgatgaattgagtgtaatttaa |
127 |
Q |
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| T |
42927893 |
ttaccaaaacaaaaagtgaaatgtaattttacggtgagatctacattacccctcgatgatatgagtgtaatttaa |
42927819 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 126
Target Start/End: Original strand, 46258508 - 46258552
Alignment:
| Q |
82 |
tatggtgagatctacattaccctttgatgaattgagtgtaattta |
126 |
Q |
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| T |
46258508 |
tatggtgagacctacattaccccttgatgaattgggggtaattta |
46258552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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