View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_5 (Length: 610)
Name: NF8926_low_5
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_5 |
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Alignment Details
Target: chr8 (Bit Score: 342; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 114 - 494
Target Start/End: Complemental strand, 168465 - 168070
Alignment:
| Q |
114 |
tttctattatactactagcattcaaccaattattgttgagaaaattcaattaatcgacaactactaacttaatgtaattatgaagaggtttatccacgat |
213 |
Q |
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| T |
168465 |
tttctattatactactagcattcaaccaattattgttgagaaaattcaattaatcgacaactactaacttaatgtaattatgaagaggtttatccacgat |
168366 |
T |
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| Q |
214 |
ttgaaaaaatttcccttgcaagaaatctgcttttcaataaccaccacagaaaccttaacgaaacaattttagttcaccacattcatacaatttaggtcac |
313 |
Q |
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| T |
168365 |
ttgaaaaaatttcccttgcaagaaatctgcttttcaataaccaccacagaaaccttaacgaaacaattttagttcaccacattcatacaatttaggtcac |
168266 |
T |
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| Q |
314 |
atggacgcccttaaccctaactt---------------ggaacagaagaaaaaggacaggcaattagcttttccatttaaagagtagttgaattgcatgc |
398 |
Q |
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| T |
168265 |
atggacgcccttaaccctaacttggcatttaaagagaaggaacagaagaaaaaggacaggcaattagcttttccatttaaagagtagttgaattgcatgc |
168166 |
T |
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| Q |
399 |
actgttgtgcgtagctttatgcatgggtgtgattatgatatgatgctttaggacaaatctgcataattgcgatttgttttagtcaatattatggtt |
494 |
Q |
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| T |
168165 |
actgttgtgcgtacctttatgcatgggtgtgattatgatatgatgctttaggacaaatctgcataattgcgatttgttttagtcaatattatggtt |
168070 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 16 - 122
Target Start/End: Complemental strand, 168759 - 168653
Alignment:
| Q |
16 |
caccaccatgatcactatttaatagattctacaaggttacctaagataagctttttatgttgaaagataatgacatcttgagcttttcgatacactattt |
115 |
Q |
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| T |
168759 |
caccaccatgatcactatttaatagattctacaaggttacctaagataagctttttatgttgaaagataatgacatcttgagcttttcgatacactattt |
168660 |
T |
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| Q |
116 |
tctatta |
122 |
Q |
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| T |
168659 |
tctatta |
168653 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 494 - 590
Target Start/End: Original strand, 167970 - 168067
Alignment:
| Q |
494 |
taacaagacttgttgtagcccgtaa-cctgtaattaagttgagcggaccaaccaatattaaatttggatgtactaaacatatgactttcttccttatg |
590 |
Q |
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| T |
167970 |
taacaagacttgttgtagcccgtaaacctgtaattaagttgagcggaccaaccaatattaaatttggatgtactagacatatgactttcttccttatg |
168067 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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