View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_54 (Length: 282)
Name: NF8926_low_54
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_54 |
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Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 18 - 268
Target Start/End: Original strand, 32941598 - 32941848
Alignment:
| Q |
18 |
cacgtttaacgtacaatctgatgcagtaggaattattgatggtacacaagaaggttcttatttatgggtatgacatacactgaactaaaagtgttgttga |
117 |
Q |
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| T |
32941598 |
cacgtttaacgtacaatcagatgcagtaggaattattgatggtacacaagaaggttcttatttatgggtatgacatacactgaactaaaagtgttgttta |
32941697 |
T |
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| Q |
118 |
tattctatttttctgataatatatttgtgagtaaatagacaaattaatctttacaattattataagtattgattaaaatattatttggtttttgagaacg |
217 |
Q |
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| T |
32941698 |
tattctatttttctgataatatatttgtgagtaaatagacaaattaatctttacaattattataagtattgattaaaatattatttggtttttgagaacg |
32941797 |
T |
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| Q |
218 |
aactataagcaaaagtggtaattaaatggttaatgtatgagagagtataat |
268 |
Q |
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| T |
32941798 |
aactataagcaaaagtggtaattaaatggttaatgtatgagagagtataat |
32941848 |
T |
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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 49 - 91
Target Start/End: Original strand, 11823665 - 11823707
Alignment:
| Q |
49 |
attattgatggtacacaagaaggttcttatttatgggtatgac |
91 |
Q |
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| T |
11823665 |
attattgatggaacccaagaaggttcttatctatgggtatgac |
11823707 |
T |
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