View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8926_low_61 (Length: 260)
Name: NF8926_low_61
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_61 |
 | |
|
| [»] scaffold0010 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Complemental strand, 14617431 - 14617181
Alignment:
| Q |
1 |
tttgctttcacactagaaacgtacgttggtacttttctttctcaaactaattagaaatagactttgagaaaatgattcaatgataatgataagattgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
14617431 |
tttgctttcacactagaaacgtacgttggtacttttctttctcaaactaattagaaatagactttgagaaaatgattcaatgattatgataagattgttt |
14617332 |
T |
|
| Q |
101 |
tggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgtattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14617331 |
tggattgattttacactaaactcatgtttaaggatatgatgatatgaacacacttagaatatgtgatccacaaatatgttacgagctggagtgtgtattc |
14617232 |
T |
|
| Q |
201 |
aagttttctcaagtttttaagagcatccaagctaatctctgtctcaaacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14617231 |
aagttttctcaagtttttaagagcatccaagctaatctctgtctcaaacac |
14617181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 251
Target Start/End: Original strand, 17712786 - 17713036
Alignment:
| Q |
1 |
tttgctttcacactagaaacgtacgttggtacttttctttctcaaactaattagaaatagactttgagaaaatgattcaatgataatgataagattgttt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17712786 |
tttgctttcacactagaaacgtacgttggtacttttctttctcaaactaattagaaatagactttgagaaaatgattcaatgataatgataagattgttt |
17712885 |
T |
|
| Q |
101 |
tggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgtattc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17712886 |
tggattgattttacactaaactcatgtttaagcatatgatgatatgaacacacttagaatatgtgatccacaaatatgttacgagctggagtgtgtattc |
17712985 |
T |
|
| Q |
201 |
aagttttctcaagtttttaagagcatccaagctaatctctgtctcaaacac |
251 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17712986 |
aagttttctcaagtttttaagagcatccaagctaatctctgtctcaaacac |
17713036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 14273100 - 14273014
Alignment:
| Q |
110 |
tttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||||||| ||||| ||||| ||| |||||||||||||||| ||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
14273100 |
tttacactcaactcgtgtttgagggtatgatgatatgaacacactcagaatatgtgatccacaaatctgttatgagctggagtgtgt |
14273014 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 54; Significance: 4e-22; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 12301641 - 12301517
Alignment:
| Q |
55 |
aaatagactttgagaaaatgattcaatgataatgataagattgttttggattgattttacactaaactcatgtttaaggatatgatgatatgaacatact |
154 |
Q |
| |
|
|||||||||| |||||| ||| ||||||| ||||||||||||||| |||| |||| | ||| ||||| ||||| ||| |||||||||||||||| ||| |
|
|
| T |
12301641 |
aaatagactt-gagaaatggatacaatgattatgataagattgtttgggatcaatttaatacttaactcgtgtttgagggtatgatgatatgaacacact |
12301543 |
T |
|
| Q |
155 |
tagaatatgtgatccacaaatatgtt |
180 |
Q |
| |
|
|||||||||||||||||||| |||| |
|
|
| T |
12301542 |
cagaatatgtgatccacaaatctgtt |
12301517 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 5378703 - 5378802
Alignment:
| Q |
97 |
gttttggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||| |||| || |||||||| ||||| ||||| ||| |||||||||||||||| || |||||||||||||||||||| ||||| ||||| |||||||| |
|
|
| T |
5378703 |
gtttgggatcgaatttacactcaactcgtgtttgagggtatgatgatatgaacacacgcagaatatgtgatccacaaatctgttatgagctagagtgtgt |
5378802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 97 - 196
Target Start/End: Complemental strand, 14102249 - 14102150
Alignment:
| Q |
97 |
gttttggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||| |||| || |||||||| ||||| ||||| ||| |||||||| || |||| ||| |||||||||||||||||||| ||||| |||||||||||||| |
|
|
| T |
14102249 |
gtttgggatcgaatttacactcaactcgtgtttgagggtatgatgaaataaacacactcagaatatgtgatccacaaatctgttatgagctggagtgtgt |
14102150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 110 - 196
Target Start/End: Complemental strand, 9419505 - 9419419
Alignment:
| Q |
110 |
tttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||||||| ||||| ||||| ||| | |||||||||||||| ||| | |||||||||||||| ||| | ||| |||||||||||||| |
|
|
| T |
9419505 |
tttacactcaactcgtgtttgagggtgtgatgatatgaacacactcacaatatgtgatccacgaatctcttatgagctggagtgtgt |
9419419 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 110 - 196
Target Start/End: Original strand, 24096342 - 24096428
Alignment:
| Q |
110 |
tttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||||||| ||||| ||||| ||| ||||||| ||| |||| ||| | |||||||||||||||||| | ||| ||||| ||||||| |
|
|
| T |
24096342 |
tttacactcaactcgtgtttgagggtatgatgctataaacacactcacaatatgtgatccacaaatctattatgagctatagtgtgt |
24096428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 97 - 196
Target Start/End: Original strand, 7784286 - 7784385
Alignment:
| Q |
97 |
gttttggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatccacaaatatgttacgagctggagtgtgt |
196 |
Q |
| |
|
|||| |||| || |||||||| |||| ||||| ||| |||||| ||||||||| ||| | ||||| |||||||||||| ||||| ||| |||||||||| |
|
|
| T |
7784286 |
gtttgggatcgaatttacactcaactattgtttgagggtatgataatatgaacacactcacaatatttgatccacaaatctgttatgagatggagtgtgt |
7784385 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 94 - 168
Target Start/End: Original strand, 35917 - 35991
Alignment:
| Q |
94 |
attgttttggattgattttacactaaactcatgtttaaggatatgatgatatgaacatacttagaatatgtgatc |
168 |
Q |
| |
|
||||||| ||||||| |||||||| ||||| | ||| || |||||||||| |||||| ||| | ||||||||||| |
|
|
| T |
35917 |
attgtttgggattgaatttacactcaactcgtatttgagaatatgatgatgtgaacacactcaaaatatgtgatc |
35991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 143 - 191
Target Start/End: Complemental strand, 1349801 - 1349753
Alignment:
| Q |
143 |
tatgaacatacttagaatatgtgatccacaaatatgttacgagctggag |
191 |
Q |
| |
|
|||||||| ||| | |||||||||||||||||| ||||| ||||||||| |
|
|
| T |
1349801 |
tatgaacacactcaaaatatgtgatccacaaatctgttatgagctggag |
1349753 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University