View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_62 (Length: 255)
Name: NF8926_low_62
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_62 |
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Alignment Details
Target: chr5 (Bit Score: 79; Significance: 5e-37; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 152 - 246
Target Start/End: Original strand, 16620133 - 16620227
Alignment:
| Q |
152 |
atttatgtatttaactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcctgctgcgttgaactttaatctctgc |
246 |
Q |
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| T |
16620133 |
atttatttatttaactatttaagtctatacctaaacctaaaacaacttaatacagtaaccctacccctcctgctgcgttgaactttaatctctgc |
16620227 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 164 - 233
Target Start/End: Original strand, 54444242 - 54444311
Alignment:
| Q |
164 |
aactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcctgctgcgttgaa |
233 |
Q |
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| T |
54444242 |
aactatttaagcataaacctaaacttaaaacaacttaatacagtaaccttaaccctcctgctgcgttgaa |
54444311 |
T |
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Target: chr7 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 163 - 222
Target Start/End: Complemental strand, 2960212 - 2960153
Alignment:
| Q |
163 |
taactatttaagtctatacctaaacctaaaacaatttaacacagaaaccctacccctcct |
222 |
Q |
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| T |
2960212 |
taactatttaagcctaaacctaaacctaaaacaacttaatatagtaaccttacccctcct |
2960153 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Complemental strand, 30391894 - 30391842
Alignment:
| Q |
149 |
ttaatttatgtatttaactatttaagtctatacctaaacctaaaacaatttaa |
201 |
Q |
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| T |
30391894 |
ttaatttatttatttaacgacttaagtctaaccctaaacctaaaacaacttaa |
30391842 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 193
Target Start/End: Original strand, 33959963 - 33959997
Alignment:
| Q |
159 |
tatttaactatttaagtctatacctaaacctaaaa |
193 |
Q |
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| T |
33959963 |
tatttaactatttaagtctaaacctaaacctaaaa |
33959997 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 149 - 201
Target Start/End: Original strand, 958609 - 958661
Alignment:
| Q |
149 |
ttaatttatgtatttaactatttaagtctatacctaaacctaaaacaatttaa |
201 |
Q |
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| T |
958609 |
ttaatttatttatttaactatttaaacctaaccctaaacctaaaacaacttaa |
958661 |
T |
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