View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8926_low_68 (Length: 236)

Name: NF8926_low_68
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8926_low_68
NF8926_low_68
[»] chr5 (7 HSPs)
chr5 (1-223)||(17712494-17712717)
chr5 (23-67)||(42732623-42732667)
chr5 (30-67)||(17553839-17553876)
chr5 (26-67)||(24244089-24244130)
chr5 (26-67)||(24290713-24290754)
chr5 (23-67)||(26652716-26652760)
chr5 (23-67)||(26924301-26924345)
[»] chr7 (6 HSPs)
chr7 (69-223)||(14617545-14617699)
chr7 (1-39)||(14617500-14617538)
chr7 (26-67)||(13874486-13874527)
chr7 (26-67)||(11634376-11634417)
chr7 (23-64)||(48710057-48710098)
chr7 (26-66)||(32818096-32818136)
[»] chr1 (2 HSPs)
chr1 (100-222)||(12301872-12301994)
chr1 (26-67)||(21919477-21919518)
[»] chr3 (3 HSPs)
chr3 (126-221)||(480262-480357)
chr3 (23-70)||(19388861-19388908)
chr3 (17-65)||(24285478-24285526)
[»] chr8 (11 HSPs)
chr8 (26-67)||(33592180-33592221)
chr8 (26-67)||(33601819-33601860)
chr8 (23-67)||(31575457-31575501)
chr8 (26-67)||(4843768-4843809)
chr8 (26-67)||(18233027-18233068)
chr8 (26-67)||(18242478-18242519)
chr8 (26-67)||(18251929-18251970)
chr8 (26-67)||(18883206-18883247)
chr8 (26-67)||(25037072-25037113)
chr8 (26-67)||(25051109-25051150)
chr8 (23-67)||(24634065-24634109)
[»] chr2 (1 HSPs)
chr2 (106-141)||(44950278-44950313)


Alignment Details
Target: chr5 (Bit Score: 188; Significance: 1e-102; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 17712717 - 17712494
Alignment:
Q  1 agagttgtctagaacgttctggtagctgaaaactatagcggaaaatctcacacgaagtgtggggacttgactagc-tacattgggtctactaggataacc 99  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||  |||||| ||||||||||||||||||||||||    
T  17712717 agagttgtctagaacattctggtagctaaaaactatagcggaaaatctcacacgaagtatgaggactgaactagcctacattgggtctactaggataacc 17712618  T
Q  100 ctcttgcccttatcttttattatttatcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgacccagaatgatatggtccttatt 199  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  17712617 ctcttgcccttatcttttattatttatcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgatccagaatgatatggtccttatt 17712518  T
Q  200 aaattaattgcataacatctatct 223  Q
    ||||||||||||||||||||||||    
T  17712517 aaattaattgcataacatctatct 17712494  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 42732667 - 42732623
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  42732667 tagctgaatactatagtggataatctcacacgaagtgtggggact 42732623  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 30 - 67
Target Start/End: Complemental strand, 17553876 - 17553839
Alignment:
Q  30 aaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  17553876 aaactatagtggaaaatctcacacaaagtgtggggact 17553839  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 24244130 - 24244089
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  24244130 ctgaatactatagtggataatctcacacgaagtgtggggact 24244089  T

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Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 24290754 - 24290713
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  24290754 ctgaatactatagtggataatctcacacgaagtgtggggact 24290713  T

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Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 26652716 - 26652760
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||    
T  26652716 tagctgaatactatagtggattatctcacacgaagtgtggggact 26652760  T

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Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 26924301 - 26924345
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    |||||||| ||||||| |||  |||||||||||||||||||||||    
T  26924301 tagctgaatactatagtggattatctcacacgaagtgtggggact 26924345  T

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Target: chr7 (Bit Score: 147; Significance: 1e-77; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 69 - 223
Target Start/End: Original strand, 14617545 - 14617699
Alignment:
Q  69 gactagctacattgggtctactaggataaccctcttgcccttatcttttattatttatcttaaacacaaatcatgcacaatcacattaataacaatttca 168  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14617545 gactagctacattgagtctactaggataaccctcttgcccttatcttttattatttatcttaaacacaaatcatgcacaatcacattaataacaatttca 14617644  T
Q  169 ttacacgacccagaatgatatggtccttattaaattaattgcataacatctatct 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||    
T  14617645 ttacacgatccagaatgatatggtccttattaaattaattgcataacatctatct 14617699  T

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Target: chr7; HSP #2
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 14617500 - 14617538
Alignment:
Q  1 agagttgtctagaacgttctggtagctgaaaactatagc 39  Q
    |||||||||||||||||||||||||||||||||||||||    
T  14617500 agagttgtctagaacgttctggtagctgaaaactatagc 14617538  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 13874486 - 13874527
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  13874486 ctgaaaactatagtggataatctcacacgaagtgtggggact 13874527  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 11634417 - 11634376
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  11634417 ctgaatactatagtggataatctcacacgaagtgtggggact 11634376  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 64
Target Start/End: Complemental strand, 48710098 - 48710057
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtgggg 64  Q
    |||||||| ||||||| ||| |||||||||||||||||||||    
T  48710098 tagctgaatactatagtggataatctcacacgaagtgtgggg 48710057  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 32818096 - 32818136
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggac 66  Q
    ||||| ||||||| ||| |||||||||||||||||||||||    
T  32818096 ctgaatactatagtggataatctcacacgaagtgtggggac 32818136  T

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Target: chr1 (Bit Score: 47; Significance: 6e-18; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 100 - 222
Target Start/End: Original strand, 12301872 - 12301994
Alignment:
Q  100 ctcttgcccttatcttttattatttatcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgacccagaatgatatggtccttatt 199  Q
    ||||| ||||||||||||||||| ||||||||||||||||||  |||||||||||| |||| | | || |||||| | | ||||  ||  | ||||||||    
T  12301872 ctcttacccttatcttttattatctatcttaaacacaaatcacacacaatcacattcataatattgtctttacactatcgagaacaatcagatccttatt 12301971  T
Q  200 aaattaattgcataacatctatc 222  Q
    | |||||||||||||||| ||||    
T  12301972 agattaattgcataacatttatc 12301994  T

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Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 21919518 - 21919477
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  21919518 ctgaaaactatagtggataatctcacacgaagtgtggggact 21919477  T

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Target: chr3 (Bit Score: 44; Significance: 4e-16; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 126 - 221
Target Start/End: Complemental strand, 480357 - 480262
Alignment:
Q  126 tcttaaacacaaatcatgcacaatcacattaataacaatttcattacacgacccagaatgatatggtccttattaaattaattgcataacatctat 221  Q
    ||||||||||||||||  ||||||||| || |||| | | |||| |||  | ||| ||||||||| ||||||||||||||||||||||||||||||    
T  480357 tcttaaacacaaatcacacacaatcacgttcataatattgtcatgacattatccaaaatgatatgatccttattaaattaattgcataacatctat 480262  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 23 - 70
Target Start/End: Original strand, 19388861 - 19388908
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggacttga 70  Q
    |||||||| |||||||  || |||||||||||||||||||||||||||    
T  19388861 tagctgaatactatagtcgataatctcacacgaagtgtggggacttga 19388908  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 17 - 65
Target Start/End: Original strand, 24285478 - 24285526
Alignment:
Q  17 ttctggtagctgaaaactatagcggaaaatctcacacgaagtgtgggga 65  Q
    ||||| |||||||| ||||||| ||| ||||||||||||||||| ||||    
T  24285478 ttctgatagctgaatactatagtggataatctcacacgaagtgtaggga 24285526  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 33592221 - 33592180
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  33592221 ctgaaaactatagtggataatctcacacgaagtgtggggact 33592180  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 33601860 - 33601819
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||||||||||| ||| ||||||||||||||||||||||||    
T  33601860 ctgaaaactatagtggataatctcacacgaagtgtggggact 33601819  T

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Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 31575501 - 31575457
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    |||||||| ||||||| ||| ||||||||||||||||||||||||    
T  31575501 tagctgaatactatagtggataatctcacacgaagtgtggggact 31575457  T

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Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 4843809 - 4843768
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  4843809 ctgaatactatagtggataatctcacacgaagtgtggggact 4843768  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18233027 - 18233068
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  18233027 ctgaatactatagtggataatctcacacgaagtgtggggact 18233068  T

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Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18242478 - 18242519
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  18242478 ctgaatactatagtggataatctcacacgaagtgtggggact 18242519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Original strand, 18251929 - 18251970
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  18251929 ctgaatactatagtggataatctcacacgaagtgtggggact 18251970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 18883247 - 18883206
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  18883247 ctgaatactatagtggataatctcacacgaagtgtggggact 18883206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 25037113 - 25037072
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  25037113 ctgaatactatagtggataatctcacacgaagtgtggggact 25037072  T

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Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 67
Target Start/End: Complemental strand, 25051150 - 25051109
Alignment:
Q  26 ctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    ||||| ||||||| ||| ||||||||||||||||||||||||    
T  25051150 ctgaatactatagtggataatctcacacgaagtgtggggact 25051109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 67
Target Start/End: Original strand, 24634065 - 24634109
Alignment:
Q  23 tagctgaaaactatagcggaaaatctcacacgaagtgtggggact 67  Q
    |||||||| ||||||| ||| ||| ||||||||||||||||||||    
T  24634065 tagctgaatactatagtggataatatcacacgaagtgtggggact 24634109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 106 - 141
Target Start/End: Original strand, 44950278 - 44950313
Alignment:
Q  106 cccttatcttttattatttatcttaaacacaaatca 141  Q
    ||||||||||||||||||| ||||||||||||||||    
T  44950278 cccttatcttttattatttgtcttaaacacaaatca 44950313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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