View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_71 (Length: 235)
Name: NF8926_low_71
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 37514640 - 37514418
Alignment:
| Q |
1 |
ttggattataggttgatttgaggggaaacatctttggtttattggctgcacatccattaagtcccttgttatccttacatcacccggatattactgatgc |
100 |
Q |
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| T |
37514640 |
ttggattataggttgatttgaggggaaacgtctttggtttattggctgcacatccattaagtcccttgttatccttacatcacccggatattactgatgc |
37514541 |
T |
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| Q |
101 |
aatcttccctaatatgacaaattcaaaatcactacagcatttatttgaagctgcatatgttgattcacaaagaatgctacaacaaactgtttgctacgat |
200 |
Q |
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| T |
37514540 |
aatcttccctaatatgacaaattcaaaatcactacagcatttatttgaagctgcatatgttgattcacaaagaatgctacaacaaactgtttgctacgat |
37514441 |
T |
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| Q |
201 |
agacggttttcacagacaatttc |
223 |
Q |
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| T |
37514440 |
agacggttttcacggacaatttc |
37514418 |
T |
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Back To:
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Target: chr4 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 138 - 223
Target Start/End: Complemental strand, 16457539 - 16457454
Alignment:
| Q |
138 |
catttatttgaagctgcatatgttgattcacaaagaatgctacaacaaactgtttgctacgatagacggttttcacagacaatttc |
223 |
Q |
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| T |
16457539 |
catttatttgaagcagtaaatgttgattctcaaaggatgttgcaacaaacaatctgctatgatagatggttttcatggacaatttc |
16457454 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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