View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8926_low_83 (Length: 208)
Name: NF8926_low_83
Description: NF8926
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8926_low_83 |
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| [»] scaffold1738 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 175; Significance: 2e-94; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8403794 - 8403604
Alignment:
| Q |
1 |
tagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgag |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
8403794 |
tagaaactgtggtggattttttgagcttttggaagagacagttgaagaaattattgaagagaaagatttgaataaaagagaaaatgatgaggtgtttgag |
8403695 |
T |
|
| Q |
101 |
atgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgaga |
191 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8403694 |
atgaagattgcattgcaattgggaagaagtgtaatgcagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgaga |
8403604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 8429649 - 8429459
Alignment:
| Q |
1 |
tagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgag |
100 |
Q |
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|||||||||| |||||||||||||||||||||||||||| |||||| ||||||||||||| ||||||||||||||||||||||| || || |||||||| |
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| T |
8429649 |
tagaaactgtagtggattttttgagcttttggaagagacggttgaagaaactattgaagataaagatttgaataaaagagaaaacggggaagtgtttgaa |
8429550 |
T |
|
| Q |
101 |
atgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatctgatgtctatcggatggaaggacgtgaga |
191 |
Q |
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| T |
8429549 |
atgaagattgctttaaaattgggaagaagtgtaatggagatgagagaatttgcctcgaaatctgctctctatcggatggaaggacgtgaga |
8429459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 8376193 - 8376297
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
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|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||||||| |
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| T |
8376193 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcctca |
8376292 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
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|
| T |
8376293 |
aaatc |
8376297 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 8395879 - 8395983
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
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| T |
8395879 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
8395978 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
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|
| T |
8395979 |
aaatc |
8395983 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 8405693 - 8405589
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
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| T |
8405693 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatctgagctgagggaacttgcatca |
8405594 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
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|
| T |
8405593 |
aaatc |
8405589 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 8430964 - 8430889
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
133 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||||||| || ||||||||||||| ||||||| |
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| T |
8430964 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaagatggctttgcaattgggaaaaagtgta |
8430889 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 8411813 - 8411709
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
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| T |
8411813 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8411714 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
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|
| T |
8411713 |
aaatc |
8411709 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 58 - 162
Target Start/End: Complemental strand, 8433911 - 8433807
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| |||| || || |||| ||||||||||||||| | ||| |||| || ||||||||| |
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| T |
8433911 |
agagaaagatttagagaaaagagaaaatggagagctatttgaattgaaaatggctttgcgattgggaagaagtgtcacagagctgagggaacttgcctca |
8433812 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
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| T |
8433811 |
aaatc |
8433807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 58 - 133
Target Start/End: Complemental strand, 8416897 - 8416822
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgta |
133 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || |||||||||||||||| |||| |
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| T |
8416897 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaaatgta |
8416822 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1738 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold1738
Description:
Target: scaffold1738; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 58 - 162
Target Start/End: Original strand, 25 - 129
Alignment:
| Q |
58 |
agagaaagatttgaataaaagagaaaatggtgaggtgtttgagatgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctca |
157 |
Q |
| |
|
|||||||||||| | |||||||||||||| ||| | ||||| ||||| || || ||||||||||||||||||||| ||| |||| || ||||| ||| |
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|
| T |
25 |
agagaaagatttagagaaaagagaaaatggagagctatttgaaatgaaaatggctttgcaattgggaagaagtgtatcagagctgagggaacttgcatca |
124 |
T |
|
| Q |
158 |
aaatc |
162 |
Q |
| |
|
||||| |
|
|
| T |
125 |
aaatc |
129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 1 - 162
Target Start/End: Complemental strand, 55330677 - 55330516
Alignment:
| Q |
1 |
tagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgag |
100 |
Q |
| |
|
|||||| ||||||||||| || |||| ||||||||||| ||||| |||| | |||||||||||||| | | ||||||||||| ||| | ||||| |
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|
| T |
55330677 |
tagaaattgtggtggattccttaagctgttggaagagactgttgatgaaacattggaagagaaagattttgagatgagagaaaatggagagttatttgaa |
55330578 |
T |
|
| Q |
101 |
atgaagattgcattgcaattgggaagaagtgtaatggagatgagagagcttgcctcaaaatc |
162 |
Q |
| |
|
||||| || || ||| |||||||||| ||| ||||||||||||||||| |||||||| |
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|
| T |
55330577 |
atgaaaatggctttgatgttgggaagaaatgtttctgagatgagagagcttgcttcaaaatc |
55330516 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 1 - 132
Target Start/End: Complemental strand, 55336109 - 55335978
Alignment:
| Q |
1 |
tagaaactgtggtggattttttgagcttttggaagagacagttgaacaaactattgaagagaaagatttgaataaaagagaaaatggtgaggtgtttgag |
100 |
Q |
| |
|
|||||||||||||||||||||| || | || | ||||| ||||| || |||| |||||||||||| | |||||||||||||||||| | ||||| |
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|
| T |
55336109 |
tagaaactgtggtggattttttaagatgtttggagagagtattgaaagcacacttgaggagaaagatttggaaaaaagagaaaatggtgagatatttgaa |
55336010 |
T |
|
| Q |
101 |
atgaagattgcattgcaattgggaagaagtgt |
132 |
Q |
| |
|
||||| || |||||| || ||||||||||| |
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|
| T |
55336009 |
atgaaaatggcattgatgttaggaagaagtgt |
55335978 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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