View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8927_high_2 (Length: 437)

Name: NF8927_high_2
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8927_high_2
NF8927_high_2
[»] chr8 (2 HSPs)
chr8 (21-227)||(13223709-13223918)
chr8 (265-420)||(13223514-13223682)
[»] chr6 (4 HSPs)
chr6 (19-108)||(21689529-21689618)
chr6 (56-103)||(30701935-30701982)
chr6 (12-106)||(29031476-29031569)
chr6 (29-98)||(4311978-4312047)
[»] scaffold0062 (1 HSPs)
scaffold0062 (25-103)||(1047-1125)
[»] chr5 (2 HSPs)
chr5 (19-108)||(22797746-22797835)
chr5 (29-100)||(26013218-26013289)
[»] chr4 (1 HSPs)
chr4 (25-102)||(22317356-22317433)
[»] chr2 (1 HSPs)
chr2 (30-106)||(23958923-23959000)
[»] scaffold0211 (1 HSPs)
scaffold0211 (25-102)||(25105-25182)
[»] chr7 (3 HSPs)
chr7 (19-103)||(17914990-17915075)
chr7 (30-104)||(7561493-7561568)
chr7 (30-106)||(1782500-1782577)
[»] scaffold0084 (1 HSPs)
scaffold0084 (23-102)||(18133-18212)
[»] chr3 (2 HSPs)
chr3 (29-103)||(26820587-26820661)
chr3 (71-103)||(17389321-17389353)
[»] scaffold0711 (1 HSPs)
scaffold0711 (70-102)||(2299-2331)
[»] chr1 (1 HSPs)
chr1 (14-102)||(12439916-12440004)


Alignment Details
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 21 - 227
Target Start/End: Complemental strand, 13223918 - 13223709
Alignment:
Q  21 acatcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcacaactgannnnnnnnnnn- 119  Q
    |||||||||||||| || ||||||||||||||||||| |||| ||||||||||||||||||||||||||| | |||||||||||||||                
T  13223918 acatcaattttatactgatttctcttacaatctaggattattccaatctccttgcacttccaatagattttattataatcacaactgattttttttttct 13223819  T
Q  120 --cacaacttcctcaagaattttctctaataattttaagatttatttttgctaatttgtgaagttgaagaatcaaatcatgtgggaatgcatttaagaaa 217  Q
      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  13223818 ttcacaacttcctcaagaattttctctaataattttaagatttatttttgctaatttgtgaagttgaagaatcaaatcatgtgggaatgcatttaagaaa 13223719  T
Q  218 aatatagatg 227  Q
    ||||||||||    
T  13223718 aatatagatg 13223709  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 5e-57
Query Start/End: Original strand, 265 - 420
Target Start/End: Complemental strand, 13223682 - 13223514
Alignment:
Q  265 aatatctcaatcaatgtttgaaattatgtgtaaaatgttccattagtacgtgcaaacgtgatcatcaaatcggagtatatatggatgaatagatggtggt 364  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||    
T  13223682 aatatctcaatcaatgtttgaaattatgtgtaaaatgttccattagtacgtgcaaacgttatgatcaaatcggagtatatatggatgaatagatggtggt 13223583  T
Q  365 ggcagagccaaa-------------acaaaaatgagaaatgacaatacaactatacaagaggcagtaat 420  Q
    |||||||||| |             ||||||||||||||||||||||||||||||||||||||||||||    
T  13223582 ggcagagccagagacacactccctcacaaaaatgagaaatgacaatacaactatacaagaggcagtaat 13223514  T

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Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 21689618 - 21689529
Alignment:
Q  19 acacatcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcacaactga 108  Q
    ||||| |||||||||| ||||| ||||||||||| ||||||| | || || |||| |||||||||  |||||||||||||||||||||||    
T  21689618 acacaacaattttatactggttcctcttacaatcaaggagtagtccagtccccttccacttccaagggatttcactataatcacaactga 21689529  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 56 - 103
Target Start/End: Complemental strand, 30701982 - 30701935
Alignment:
Q  56 gagtatttcaatctccttgcacttccaatagatttcactataatcaca 103  Q
    ||||||||||||| |||||||||||||| | |||||||||||||||||    
T  30701982 gagtatttcaatccccttgcacttccaacatatttcactataatcaca 30701935  T

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Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 29031476 - 29031569
Alignment:
Q  12 agcagagacacatcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagattt-cactataatcacaact 106  Q
    |||||| |||||||||||  ||| ||||| ||| | |||| |||||||| |||| || |||| ||||||||| |||||| ||||||||||||||||    
T  29031476 agcagacacacatcaatt--ataatggttgctcctgcaatttaggagtagttcagtccccttccacttccaagagattttcactataatcacaact 29031569  T

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Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 29 - 98
Target Start/End: Original strand, 4311978 - 4312047
Alignment:
Q  29 tttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataa 98  Q
    |||||||||||| ||| ||||| ||||||||| |  | |||| ||||||||||||  |||||||||||||    
T  4311978 tttatattggttcctcctacaaactaggagtaatctagtctcattgcacttccaagggatttcactataa 4312047  T

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Target: scaffold0062 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: scaffold0062
Description:

Target: scaffold0062; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 25 - 103
Target Start/End: Original strand, 1047 - 1125
Alignment:
Q  25 caattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcaca 103  Q
    |||||||||||||||| ||| ||||||| ||||||| | || ||||||| ||||||||| |||||||||||| ||||||    
T  1047 caattttatattggttcctcctacaatccaggagtagtccagtctccttacacttccaagagatttcactatgatcaca 1125  T

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Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 19 - 108
Target Start/End: Complemental strand, 22797835 - 22797746
Alignment:
Q  19 acacatcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcacaactga 108  Q
    ||||| |||||||||  ||||||||| | ||||||||||||| | || || |||||||||| |||  |||||||||||| ||||||||||    
T  22797835 acacaacaattttatcctggtttctcctgcaatctaggagtagtccagtccccttgcacttacaagggatttcactatagtcacaactga 22797746  T

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Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 29 - 100
Target Start/End: Original strand, 26013218 - 26013289
Alignment:
Q  29 tttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatc 100  Q
    |||||||||||| ||| ||||| | ||||||| | |||||||||||||||| |||  |||||||||||||||    
T  26013218 tttatattggttcctcctacaaaccaggagtagtccaatctccttgcactttcaagggatttcactataatc 26013289  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 25 - 102
Target Start/End: Complemental strand, 22317433 - 22317356
Alignment:
Q  25 caattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcac 102  Q
    |||||||||| ||||| ||| ||||||| ||||||| | || |||| ||||||||||||  |||||||||||||||||    
T  22317433 caattttatactggttcctcctacaatccaggagtagtccagtctcattgcacttccaagggatttcactataatcac 22317356  T

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Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 23958923 - 23959000
Alignment:
Q  30 ttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaataga-tttcactataatcacaact 106  Q
    ||||||||||| ||||||||||| ||||||| | || || |||||||||||||| ||| ||||| |||||||||||||    
T  23958923 ttatattggttcctcttacaatccaggagtagtccagtccccttgcacttccaagagattttcattataatcacaact 23959000  T

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Target: scaffold0211 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0211
Description:

Target: scaffold0211; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 25 - 102
Target Start/End: Original strand, 25105 - 25182
Alignment:
Q  25 caattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcac 102  Q
    |||||||||||||||| |||  |||||  ||||||| | ||||| ||||||||||||||  | |||||||||||||||    
T  25105 caattttatattggttcctcccacaataaaggagtagtccaatccccttgcacttccaaggggtttcactataatcac 25182  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 103
Target Start/End: Original strand, 17914990 - 17915075
Alignment:
Q  19 acacatcaattttatattggtttc-tcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcaca 103  Q
    ||||| |||||||||| ||||||| || ||| ||| ||||||| | || || |||||||||| ||| |||||||||||||||||||    
T  17914990 acacaacaattttatactggtttcctcctactatccaggagtagtccattccccttgcactttcaagagatttcactataatcaca 17915075  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 7561568 - 7561493
Alignment:
Q  30 ttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaataga-tttcactataatcacaa 104  Q
    ||||||||||| ||| |||||||  |||||| ||||| | |||||||||||||| ||| ||| |||||||||||||    
T  7561568 ttatattggttactcctacaatcctggagtagttcaaaccccttgcacttccaagagattttgactataatcacaa 7561493  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 30 - 106
Target Start/End: Original strand, 1782500 - 1782577
Alignment:
Q  30 ttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagat-ttcactataatcacaact 106  Q
    ||||| ||||| |||  ||||| |||||||| |||| || | |||||||||||| |||| ||||||||||||||||||    
T  1782500 ttatactggttcctccgacaatttaggagtaattcagtcccattgcacttccaagagatattcactataatcacaact 1782577  T

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Target: scaffold0084 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0084
Description:

Target: scaffold0084; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 23 - 102
Target Start/End: Complemental strand, 18212 - 18133
Alignment:
Q  23 atcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcac 102  Q
    |||||||||||||||||| ||| |||||   ||||||| |  | |||||||| |||||||| || |||||||||||||||    
T  18212 atcaattttatattggttcctcctacaacaaaggagtagtcgagtctccttgtacttccaagaggtttcactataatcac 18133  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 29 - 103
Target Start/End: Original strand, 26820587 - 26820661
Alignment:
Q  29 tttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcaca 103  Q
    ||||||| |||| ||| || |||||||||||| | || || | |||||||||||| | |||||||||||||||||    
T  26820587 tttatatcggttcctcctataatctaggagtagtccattccctttgcacttccaagaaatttcactataatcaca 26820661  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 71 - 103
Target Start/End: Complemental strand, 17389353 - 17389321
Alignment:
Q  71 cttgcacttccaatagatttcactataatcaca 103  Q
    |||||||||||||| ||||||||||||||||||    
T  17389353 cttgcacttccaatggatttcactataatcaca 17389321  T

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Target: scaffold0711 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0711
Description:

Target: scaffold0711; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 70 - 102
Target Start/End: Complemental strand, 2331 - 2299
Alignment:
Q  70 ccttgcacttccaatagatttcactataatcac 102  Q
    |||||||||||||| ||||||||||||||||||    
T  2331 ccttgcacttccaaaagatttcactataatcac 2299  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 12440004 - 12439916
Alignment:
Q  14 cagagacacatcaattttatattggtttctcttacaatctaggagtatttcaatctccttgcacttccaatagatttcactataatcac 102  Q
    |||||||| | |||||||||| | ||| |||  |||||  ||||||| | |||||  |||||||||||||  |||||||||||||||||    
T  12440004 cagagacaaaacaattttatactagttcctcccacaattcaggagtactccaatcctcttgcacttccaagggatttcactataatcac 12439916  T

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