View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8927_high_4 (Length: 358)

Name: NF8927_high_4
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8927_high_4
NF8927_high_4
[»] chr5 (2 HSPs)
chr5 (96-350)||(33560262-33560516)
chr5 (16-63)||(33560215-33560262)
[»] chr2 (28 HSPs)
chr2 (100-350)||(39389615-39389865)
chr2 (122-345)||(39136598-39136821)
chr2 (122-352)||(39390453-39390683)
chr2 (111-349)||(39390918-39391147)
chr2 (100-225)||(38792909-38793034)
chr2 (100-246)||(39221633-39221779)
chr2 (146-350)||(39415896-39416100)
chr2 (137-350)||(39222300-39222513)
chr2 (163-349)||(39390246-39390432)
chr2 (163-350)||(39221180-39221358)
chr2 (295-350)||(39458699-39458754)
chr2 (16-74)||(39193077-39193135)
chr2 (16-74)||(39198757-39198815)
chr2 (131-197)||(39415161-39415227)
chr2 (152-224)||(39137291-39137363)
chr2 (163-247)||(39390138-39390222)
chr2 (294-349)||(39192751-39192806)
chr2 (294-349)||(39198431-39198486)
chr2 (32-75)||(39390697-39390740)
chr2 (115-225)||(38792672-38792782)
chr2 (149-223)||(39136877-39136951)
chr2 (101-227)||(39451413-39451539)
chr2 (116-201)||(39415283-39415368)
chr2 (122-223)||(39473931-39474032)
chr2 (145-225)||(38792443-38792523)
chr2 (306-350)||(39137445-39137489)
chr2 (122-186)||(39422180-39422244)
chr2 (122-226)||(39451686-39451790)
[»] chr7 (3 HSPs)
chr7 (122-345)||(19806959-19807182)
chr7 (136-223)||(19807225-19807312)
chr7 (306-350)||(19807395-19807439)
[»] chr3 (1 HSPs)
chr3 (21-61)||(51574593-51574633)


Alignment Details
Target: chr5 (Bit Score: 171; Significance: 9e-92; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 171; E-Value: 9e-92
Query Start/End: Original strand, 96 - 350
Target Start/End: Original strand, 33560262 - 33560516
Alignment:
Q  96 aaaaccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatgga 195  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||  ||    
T  33560262 aaaaccaaatgaaggagcatgtattgaaacaggagcattgagaaagccaaatgaaggagcttcagtcaaaagagaagcaacttgaaggccgattgaatga 33560361  T
Q  196 gcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattg 295  Q
    |||||||||||||||||| |||||||||||| || ||||||||||||||| | ||| | ||| | |  ||||||||||||| ||| ||||||||||||||    
T  33560362 gcatgagtcaaaggagaaggaatttgaaggctgtgtgaaggagatggaatataaagcgaagcatttcgaaagcatggtggaggagctcaaatcaaaattg 33560461  T
Q  296 aggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
    ||| | ||||||| |||||||||||||||||| ||||||||||||||||||||||    
T  33560462 aggtcgttgaaagaacaacttcaagaacttgattctaaagagaagcaacttgatg 33560516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 63
Target Start/End: Original strand, 33560215 - 33560262
Alignment:
Q  16 acatcaaggccgggtgaaggagttggaatcaaaagagaaggactttga 63  Q
    |||| ||||||||||||||||||| ||||||||||||||||| |||||    
T  33560215 acatgaaggccgggtgaaggagtttgaatcaaaagagaaggattttga 33560262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 103; Significance: 3e-51; HSPs: 28)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 100 - 350
Target Start/End: Complemental strand, 39389865 - 39389615
Alignment:
Q  100 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 199  Q
    ||||||| ||||||| |||||||||||| |||||| | |||||||||||||||||||| ||| ||||| |||||||||||||| || ||||  |||||||    
T  39389865 ccaaatggaggagcaggtattgaaacagaagcattataaaagccaaatgaaggagcttgagtcaaaagggaagcaacttgaagaccaattgcaggagcat 39389766  T
Q  200 gagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggc 299  Q
    || ||||||||||| ||||||||||| |    ||||||| |||||||| || || ||| | |  |||||||| |||  ||| ||||||||||||||||||    
T  39389765 gaatcaaaggagaaggaatttgaaggtcaagcgaaggagctggaatctaaaaagaagcatttcgaaagcatgatggtggagctcaaatcaaaattgaggc 39389666  T
Q  300 cattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
     |||||||| |||| |||| ||| ||||||| |||||||||||||||||||    
T  39389665 tattgaaagtacaatttcaggaatttgactccaaagagaagcaacttgatg 39389615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 345
Target Start/End: Original strand, 39136598 - 39136821
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 221  Q
    |||||| ||||||  |||||||| || ||||||||| |||  ||||||| |||||||||||||||||||| ||||||||| |   | || ||||||||||    
T  39136598 aaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaattggaagaaaaagaatttg 39136697  T
Q  222 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 321  Q
    ||||||| ||||| ||| |||||||| |||||  || | | ||||||  |||||| ||| ||||  ||||||||| |||||||||||||||| || | ||    
T  39136698 aaggccggatgaatgagctggaatctaaagagaggcatttcaaaagcgaggtggaggagatcaatgcaaaattgatgccattgaaaggacaaattaagga 39136797  T
Q  322 acttgactctaaagagaagcaact 345  Q
    ||||| ||||||||||||||||||    
T  39136798 acttgcctctaaagagaagcaact 39136821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 122 - 352
Target Start/End: Complemental strand, 39390683 - 39390453
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 221  Q
    |||||| |||||| ||||||||||||||||||| || ||| |||||||||||||| |||| ||||| ||| ||||||||| ||||| |||| ||||||||    
T  39390683 aaacagaagcattttgaaagccaaatgaaggagtttgagtcaaaagagaagcaacatgaaagccgagtgaaggagcatgaatcaaaagagagagaatttg 39390584  T
Q  222 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 321  Q
    ||||||  ||||||||  |||||||| ||  | ||| | || |||||   ||||| ||| ||||| || ||  ||||| ||||||||||||| || | ||    
T  39390583 aaggccaaatgaaggaactggaatctaaaaggaagcattttgaaagccaagtggaggagctcaaaacagaagagaggcaattgaaaggacaagttaagga 39390484  T
Q  322 acttgactctaaagagaagcaacttgatgtc 352  Q
    |||||| ||||||||||||||| ||||||||    
T  39390483 acttgagtctaaagagaagcaatttgatgtc 39390453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 111 - 349
Target Start/End: Complemental strand, 39391147 - 39390918
Alignment:
Q  111 agcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaagga 210  Q
    |||| |||||||| ||| ||||||||||||||||||||||||||||| |||  |||||||| ||||||||||||| ||||| ||||||||| | ||||||    
T  39391147 agcaggtattgaagcagaagcattgtgaaagccaaatgaaggagcttgagtccaaagagaaacaacttgaaggccaattgaaggagcatgaattaaagga 39391048  T
Q  211 gaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaagga 310  Q
    ||| |||||||||||||||          |||||||| || || ||| | |  || ||||| |||| ||| ||||||||| | ||||| | ||||||| |    
T  39391047 gaaggaatttgaaggccgt---------gtggaatctaaaaagaagcatttcgaaggcatgatggaggagctcaaatcaagaatgaggtctttgaaagaa 39390957  T
Q  311 caacttcaagaacttgactctaaagagaagcaacttgat 349  Q
    ||| || | ||||||||||||||||||||||||||||||    
T  39390956 caagttgaggaacttgactctaaagagaagcaacttgat 39390918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 225
Target Start/End: Original strand, 38792909 - 38793034
Alignment:
Q  100 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 199  Q
    ||||||||||||||  |||||||||||| ||||||  ||||||||||||||||| ||| |||| |||||||| |||  ||||| |||  ||| |||||||    
T  38792909 ccaaatgaaggagctggtattgaaacagaagcatttcgaaagccaaatgaaggaacttgagttgaaagagaaccaaaatgaagaccggatgaaggagcat 38793008  T
Q  200 gagtcaaaggagaaagaatttgaagg 225  Q
    || |||||| ||  ||||||||||||    
T  38793009 gactcaaagaagcgagaatttgaagg 38793034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 100 - 246
Target Start/End: Original strand, 39221633 - 39221779
Alignment:
Q  100 ccaaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcat 199  Q
    |||||||||||||| ||  || |||||  | |||| ||||||||| ||||||||| || ||| |||||||||||||| ||||||| |  ||| |||||||    
T  39221633 ccaaatgaaggagcttgagttaaaacaaaaacattttgaaagccagatgaaggagtttgagtcaaaagagaagcaacatgaaggctgggtgaaggagcat 39221732  T
Q  200 gagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatc 246  Q
    |  ||||| |||| ||||||||||||||  ||||||||  |||||||    
T  39221733 ggatcaaaagagagagaatttgaaggccaaatgaaggatttggaatc 39221779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 146 - 350
Target Start/End: Complemental strand, 39416100 - 39415896
Alignment:
Q  146 atgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaat 245  Q
    |||||||||||| |||  || ||||||||||||| ||||| ||||| ||||||||| ||  | || ||||||||||||| |||  |||| ||| ||||||    
T  39416100 atgaaggagcttgagtctaatgagaagcaacttggaggccaattgaaggagcatgaatccgaagaaaaagaatttgaagaccgagtgaatgagctggaat 39416001  T
Q  246 ctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaact 345  Q
    || |||||  |  | | || | |  |||||| ||| ||||  ||||||||| |||||||||||||||  || | |||||||  |||||||||||||||||    
T  39416000 ctaaagagaggtatttcaataactgggtggaggagctcaatacaaaattgatgccattgaaaggacagtttaaggaacttgcttctaaagagaagcaact 39415901  T
Q  346 tgatg 350  Q
     ||||    
T  39415900 cgatg 39415896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 137 - 350
Target Start/End: Original strand, 39222300 - 39222513
Alignment:
Q  137 gaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaagg 236  Q
    |||||||||||||||||| || |||  |||||||||||||||||||||| | ||| ||||||| | ||||| |||| || ||| |||||||   ||||||    
T  39222300 gaaagccaaatgaaggagtttgagtctaaagagaagcaacttgaaggccaagtgaaggagcataaatcaaaagagagaggattcgaaggccaactgaagg 39222399  T
Q  237 agatggaatctgaagaggagc-ttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaag 335  Q
    |  |||||||  || || ||| || | |||| ||  ||||| ||| |||||||||||  ||||| ||||||||||||  || | ||| |||| |||||||    
T  39222400 aactggaatccaaaaagaagcattttgaaaatca-agtggaggagttcaaatcaaaagagaggcaattgaaaggacaggttaaggaaattgagtctaaag 39222498  T
Q  336 agaagcaacttgatg 350  Q
    ||||| || ||||||    
T  39222499 agaagaaatttgatg 39222513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 349
Target Start/End: Complemental strand, 39390432 - 39390246
Alignment:
Q  163 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgtt 262  Q
    |||||||||||||| |||| ||||| ||| ||||||||  ||||| |||| ||||||||||||||  ||||||||  |||||||| ||  | ||| | ||    
T  39390432 aaaagagaagcaacatgaaagccgagtgaaggagcatggatcaaaagagagagaatttgaaggccaaatgaaggaactggaatctaaaaggaagcatttt 39390333  T
Q  263 aaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 349  Q
     |||||   ||||| ||| ||||| ||||| ||| || |||||||||| || || | |||||||| |||| ||||| |||| |||||    
T  39390332 gaaagccaagtggaggagctcaaaacaaaagtgaagcaattgaaaggagaagttaaggaacttgagtctagagagatgcaatttgat 39390246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 350
Target Start/End: Original strand, 39221180 - 39221358
Alignment:
Q  163 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatctgaagaggagcttgtt 262  Q
    |||| ||||| || ||||||| ||||||| ||||||||| ||||||||||| ||| |||||||||||          |||||||| || || ||| | |     
T  39221180 aaaacagaaggaatttgaaggtcgattgaaggagcatgaatcaaaggagaaggaacttgaaggccgt---------gtggaatctaaaaagaagcatttc 39221270  T
Q  263 aaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
     |||||||| |||| ||| |||||||||   ||||  |||||||||||||  || | ||||||||||| |||||||||||||||||||    
T  39221271 gaaagcatgatggaggagctcaaatcaagcatgagttcattgaaaggacaggttgaggaacttgactccaaagagaagcaacttgatg 39221358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 295 - 350
Target Start/End: Original strand, 39458699 - 39458754
Alignment:
Q  295 gaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
    ||||| ||||||||||||| || | |||||||| ||||||||||||||||||||||    
T  39458699 gaggcaattgaaaggacaagttaaggaacttgagtctaaagagaagcaacttgatg 39458754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 39193135 - 39193077
Alignment:
Q  16 acatcaaggccgggtgaaggagttggaatcaaaagagaaggactttgagtgccaaatga 74  Q
    |||| |||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  39193135 acatgaaggtcgggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39193077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 16 - 74
Target Start/End: Complemental strand, 39198815 - 39198757
Alignment:
Q  16 acatcaaggccgggtgaaggagttggaatcaaaagagaaggactttgagtgccaaatga 74  Q
    |||| |||| ||||||||| |||| ||||||||||||||||| ||||| ||||||||||    
T  39198815 acatgaaggtcgggtgaagaagtttgaatcaaaagagaaggaatttgaatgccaaatga 39198757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 131 - 197
Target Start/End: Complemental strand, 39415227 - 39415161
Alignment:
Q  131 cattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagc 197  Q
    |||| |||||||| ||||||||||||| ||| |||||||||||||| |||||| ||| ||| |||||    
T  39415227 cattttgaaagccgaatgaaggagcttgagtcaaaagagaagcaacatgaaggtcgagtgaaggagc 39415161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 152 - 224
Target Start/End: Original strand, 39137291 - 39137363
Alignment:
Q  152 gagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaag 224  Q
    |||||||| | ||||||||| |||| |||||||||  ||||||||||||| ||||| | || |||||||||||    
T  39137291 gagcttcattcaaaagagaaacaacatgaaggccgggtgatggagcatgaatcaaaagtgagagaatttgaag 39137363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 39390222 - 39390138
Alignment:
Q  163 aaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaaggccgtatgaaggagatggaatct 247  Q
    |||||||||||||| |||| ||||| ||| ||||||||| || || |||| ||| ||||||||||  ||||||||  ||||||||    
T  39390222 aaaagagaagcaacatgaaagccgagtgaaggagcatgaatccaaagagagagattttgaaggccaaatgaaggaactggaatct 39390138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 39192806 - 39192751
Alignment:
Q  294 tgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 349  Q
    |||||||||||| ||||||| || | ||| || |||||||||||||||||||||||    
T  39192806 tgaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39192751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 294 - 349
Target Start/End: Complemental strand, 39198486 - 39198431
Alignment:
Q  294 tgaggccattgaaaggacaacttcaagaacttgactctaaagagaagcaacttgat 349  Q
    |||||||||||| ||||||| || | ||| || |||||||||||||||||||||||    
T  39198486 tgaggccattgataggacaagttaaggaattttactctaaagagaagcaacttgat 39198431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 75
Target Start/End: Complemental strand, 39390740 - 39390697
Alignment:
Q  32 aaggagttggaatcaaaagagaaggactttgagtgccaaatgat 75  Q
    |||||||| ||||||||||||||||| ||||| |||||||||||    
T  39390740 aaggagtttgaatcaaaagagaaggaatttgaatgccaaatgat 39390697  T

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Target: chr2; HSP #20
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 115 - 225
Target Start/End: Original strand, 38792672 - 38792782
Alignment:
Q  115 tgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaa 214  Q
    ||||||||||||| ||| ||  |||| || ||||||||| ||| |||  ||||| ||||||  |||||||||  ||| |||||| || ||||| |||| |    
T  38792672 tgtattgaaacagaagcttttcgaaaaccgaatgaaggaccttgagtcgaaagaaaagcaatatgaaggccgggtgaaggagcacgaatcaaaagagaga 38792771  T
Q  215 gaatttgaagg 225  Q
    |||||||||||    
T  38792772 gaatttgaagg 38792782  T

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Target: chr2; HSP #21
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 149 - 223
Target Start/End: Original strand, 39136877 - 39136951
Alignment:
Q  149 aaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaa 223  Q
    ||||||||| ||| |||||||||||| | |||||||||  ||| ||||||||  ||||| |||| ||||||||||    
T  39136877 aaggagcttgagtcaaaagagaagcagcatgaaggccgggtgaaggagcatgcatcaaaagagagagaatttgaa 39136951  T

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Target: chr2; HSP #22
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 227
Target Start/End: Original strand, 39451413 - 39451539
Alignment:
Q  101 caaatgaaggagcatgtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatg 200  Q
    ||||||||||||   | ||| |||||| | |||| ||||||||  ||| |||| ||| | | ||| ||||||||||||||| |||| |||| ||||||||    
T  39451413 caaatgaaggagttggaattaaaacagaaacattatgaaagccggatggaggaccttgactcaaatgagaagcaacttgaaagccggttgaaggagcatg 39451512  T
Q  201 agtcaaaggagaaagaatttgaaggcc 227  Q
    | ||||| || | ||| ||||||||||    
T  39451513 aatcaaaagaaagagagtttgaaggcc 39451539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 116 - 201
Target Start/End: Complemental strand, 39415368 - 39415283
Alignment:
Q  116 gtattgaaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatga 201  Q
    |||||||||||| ||||||  ||||||||| |||| |||||| |||  ||||  ||||||  ||||| |||||||| |||||||||    
T  39415368 gtattgaaacagaagcatttagaaagccaagtgaaagagcttgagtcgaaagcaaagcaagatgaagtccgattgaaggagcatga 39415283  T

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Target: chr2; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 122 - 223
Target Start/End: Complemental strand, 39474032 - 39473931
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 221  Q
    |||||| |||||| ||||||||  ||| || ||||| ||| |||||||||||| ||||| |||||| ||  ||||||| | |||||  ||| ||||||||    
T  39474032 aaacagaagcattttgaaagccgcatggagaagcttaagtcaaaagagaagcagcttgatggccgagtggaggagcataaatcaaaacagagagaatttg 39473933  T
Q  222 aa 223  Q
    ||    
T  39473932 aa 39473931  T

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Target: chr2; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 225
Target Start/End: Original strand, 38792443 - 38792523
Alignment:
Q  145 aatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaagg 225  Q
    ||||||||| ||| |||||||||||||||| | |||||| ||  ||| ||||||||| |||||   || ||||||||||||    
T  38792443 aatgaaggaccttgagttaaaagagaagcagcatgaaggtcgggtgaaggagcatgaatcaaaaacgagagaatttgaagg 38792523  T

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Target: chr2; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 39137445 - 39137489
Alignment:
Q  306 aaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
    |||||||| || |||||||||| |||||||||||| |||||||||    
T  39137445 aaggacaatttaaagaacttgagtctaaagagaagaaacttgatg 39137489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 186
Target Start/End: Complemental strand, 39422244 - 39422180
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccg 186  Q
    |||||| |||| | |||||||| ||||||||| ||| |||  ||||||||||||||||| |||||    
T  39422244 aaacagaagcaatttgaaagccgaatgaaggaccttgagtctaaagagaagcaacttgatggccg 39422180  T

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Target: chr2; HSP #28
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 122 - 226
Target Start/End: Original strand, 39451686 - 39451790
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 221  Q
    |||||| | |||| ||||||||  ||| |||| ||| | ||||| |||| ||||| ||| |||||  ||||||||||||| ||||| | || ||||||||    
T  39451686 aaacagaaacattatgaaagccggatggaggaccttgacttaaatgagaggcaacatgagggccgggtgatggagcatgaatcaaaagtgagagaatttg 39451785  T
Q  222 aaggc 226  Q
    |||||    
T  39451786 aaggc 39451790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 122 - 345
Target Start/End: Original strand, 19806959 - 19807182
Alignment:
Q  122 aaacaggagcattgtgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttg 221  Q
    |||||| ||||||  |||||||| || ||||||||| |||  ||||||| |||||||||||||||||||| ||||||||| ||| | ||  |||||||||    
T  19806959 aaacagaagcatttcgaaagccatattaaggagcttgagtcgaaagagaggcaacttgaaggccgattgaaggagcatgaatcagaagaacaagaatttg 19807058  T
Q  222 aaggccgtatgaaggagatggaatctgaagaggagcttgttaaaagcatggtggatgaggtcaaatcaaaattgaggccattgaaaggacaacttcaaga 321  Q
    |||||||  |||| ||| |||||||| |||||  || | | ||||||  |||||| ||| ||||  ||||||||| ||||||||||||||||||| | ||    
T  19807059 aaggccgagtgaatgagctggaatctaaagagaggcatttcaaaagcgaggtggaggagctcaatacaaaattgatgccattgaaaggacaacttaagga 19807158  T
Q  322 acttgactctaaagagaagcaact 345  Q
     |||| ||||||||||||||||||    
T  19807159 gcttgcctctaaagagaagcaact 19807182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 136 - 223
Target Start/End: Original strand, 19807225 - 19807312
Alignment:
Q  136 tgaaagccaaatgaaggagcttcagttaaaagagaagcaacttgaaggccgattgatggagcatgagtcaaaggagaaagaatttgaa 223  Q
    ||||| || ||| ||||||||| ||| |||||||||||| | |||||||||  ||| ||||||||  ||||| |||| ||||||||||    
T  19807225 tgaaaaccgaatcaaggagcttgagtcaaaagagaagcagcatgaaggccggatgaaggagcatgcatcaaaagagagagaatttgaa 19807312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 306 - 350
Target Start/End: Original strand, 19807395 - 19807439
Alignment:
Q  306 aaggacaacttcaagaacttgactctaaagagaagcaacttgatg 350  Q
    |||||||| || |||||||||| ||||||| ||||||||||||||    
T  19807395 aaggacaagttaaagaacttgagtctaaagcgaagcaacttgatg 19807439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 51574593 - 51574633
Alignment:
Q  21 aaggccgggtgaaggagttggaatcaaaagagaaggacttt 61  Q
    |||| |||||||||||||| |||||||||||| ||||||||    
T  51574593 aaggtcgggtgaaggagtttgaatcaaaagaggaggacttt 51574633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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