View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8927_low_1 (Length: 823)
Name: NF8927_low_1
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8927_low_1 |
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Alignment Details
Target: chr5 (Bit Score: 417; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 151 - 807
Target Start/End: Original strand, 925329 - 925981
Alignment:
| Q |
151 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccannnnnnngtatacatttgatcttcctaggacgcatgttcaaatgtatatgcga |
250 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925329 |
tgggtgggtttgtagagagcagaaacagaatggataaggcatcaccatttttttgtatacatttgatcttcctaggacgcatgttcaaatgtatatgcga |
925428 |
T |
|
| Q |
251 |
agtatctcatattagtca-------tgtacaatatgnnnnnnngttagaggatgtaaaatctgtttaaagnnnnnnngaaattacatacatatacatatg |
343 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||| |||||||||||||||| | |
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| T |
925429 |
agtatctcatattagtcaatagtcatgtacaatatgtttttttgttagaggatgtaaaatctgtttaaagaaaaaaagaaattacatacatat------g |
925522 |
T |
|
| Q |
344 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatctagacctcatagatctaaatcaatatcttaattacttgat |
443 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
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| T |
925523 |
agtggagcatcgttactttaaaacgtacacatacatatactttttcaattttaaagcatcta---------------aatcaataccttaattacttgat |
925607 |
T |
|
| Q |
444 |
aggagattgtacgatgatatatctgaatcatggttcaattagattgtatcggacaaccaataaattaatnnnnnnnn----------ttaaatgataaat |
533 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||| ||||||||||||| |
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| T |
925608 |
aggagattgtacgatgatatatctggatcatggttcaattagattgaatcggacaaccaataaattaataaaataaaataaaaaaaattaaatgataaat |
925707 |
T |
|
| Q |
534 |
gcaaagtgtcctctaattttgttacatatatttaatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaaga |
633 |
Q |
| |
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|||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925708 |
gcaaagtgtcctttaattttgttacatatatttaatcatagttgaatatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaaga |
925807 |
T |
|
| Q |
634 |
atacatactttctaagaactccctcgttttgaaaaccaactttctcaagtactctttgcgacccaacattatccacatcaacaagagcttcaagcctttc |
733 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
925808 |
atacatactttctaagaactccctctttttgaaaaccaactttttcaagtactctttgtgacccaacattatccacatcaacaagagcttcaagcctttc |
925907 |
T |
|
| Q |
734 |
caaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacatgtggcaatccctttac |
807 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
925908 |
caaatatgaaaattcactgaatgcaaatgtaaccataaccatttgtttcacagcacacgtggcaatccctttac |
925981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 567 - 807
Target Start/End: Original strand, 935203 - 935437
Alignment:
| Q |
567 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
666 |
Q |
| |
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||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||| ||||||| |
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|
| T |
935203 |
aatcatagttgaagatcagtaaaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatacttcctaagaagcccctctttttgaa |
935302 |
T |
|
| Q |
667 |
aaccaactttctcaagtactctttgcgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaac |
766 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||| |||||||||||||| |||||||||||| || ||||||||||||||| ||| |
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| T |
935303 |
aaccaactttctcaagtactttttgcgacccaacattatccatatcaacaagagcttgaagcctttccaaggattgaaattcactgaatgc------aac |
935396 |
T |
|
| Q |
767 |
cataaccatttgtttcacagcacatgtggcaatccctttac |
807 |
Q |
| |
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| ||||||||||||||||||||||||||||||||||||||| |
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|
| T |
935397 |
cttaaccatttgtttcacagcacatgtggcaatccctttac |
935437 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 5 - 151
Target Start/End: Original strand, 925142 - 925287
Alignment:
| Q |
5 |
gacaagtaatgaatttgttttggctataatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagatttcatgaga |
104 |
Q |
| |
|
||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
925142 |
gacaagtaatgaatttgttttgg-tctaatgatagttaaaaagcttttaatatttgatatatgcatatagttgaaaaattatccaatagatttcatgaga |
925240 |
T |
|
| Q |
105 |
tattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
151 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
925241 |
tattgaaaaatcatagataggaagtgattttgttgttttgtgtgaat |
925287 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 102; E-Value: 3e-50
Query Start/End: Original strand, 567 - 807
Target Start/End: Original strand, 928073 - 928307
Alignment:
| Q |
567 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
666 |
Q |
| |
|
||||||||||| |||||| ||||||||| ||| ||||||||||||||||||||||||||||| | || | |||||| |||||| |||||| ||||| | |
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| T |
928073 |
aatcatagttggagatcattagaaagaacactaaacatgatcatatctctgctttttcctttcatgaccaaatacttcctaagagttccctccttttgga |
928172 |
T |
|
| Q |
667 |
aaccaactttctcaagtactctttgcgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaac |
766 |
Q |
| |
|
||||| ||||||| | || ||||| ||||||||||| |||||||||||||||||||||||||||||||| || ||||||||| |||||| || |
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| T |
928173 |
aaccagctttctccaaaaccctttgagacccaacattttccacatcaacaagagcttcaagcctttccaagtacgaaaattcatcgaatgc------aat |
928266 |
T |
|
| Q |
767 |
cataaccatttgtttcacagcacatgtggcaatccctttac |
807 |
Q |
| |
|
| |||| ||||||||||||||||||||| |||||||||||| |
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| T |
928267 |
cttaacaatttgtttcacagcacatgtgacaatccctttac |
928307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 82; E-Value: 3e-38
Query Start/End: Original strand, 567 - 807
Target Start/End: Original strand, 923712 - 923946
Alignment:
| Q |
567 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
666 |
Q |
| |
|
||||||||||| |||||||| | |||| |||| | |||||||||||||| ||||||||||| | || | ||| || |||||||||||||| ||||| | |
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|
| T |
923712 |
aatcatagttggggatcagtaaagagaacactggagatgatcatatctctactttttcctttcatgaccaaatatttcctaagaactccctctttttgga |
923811 |
T |
|
| Q |
667 |
aaccaactttctcaagtactctttgcgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaaatgtaac |
766 |
Q |
| |
|
||||| ||||||| | |||||||| |||||| |||| |||||||||||||||||||||||||||||||| || || || |||| |||||| ||| |
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|
| T |
923812 |
aaccagctttctccaaaactctttgagacccagcattttccacatcaacaagagcttcaagcctttccaagtaagacaactcacagaatgc------aac |
923905 |
T |
|
| Q |
767 |
cataaccatttgtttcacagcacatgtggcaatccctttac |
807 |
Q |
| |
|
| |||||| |||||||||| |||| ||||||| |||||||| |
|
|
| T |
923906 |
cttaaccacttgtttcacaacacaagtggcaacccctttac |
923946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 73; E-Value: 6e-33
Query Start/End: Original strand, 567 - 759
Target Start/End: Original strand, 938992 - 939184
Alignment:
| Q |
567 |
aatcatagttgaagatcagtagaaagaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaa |
666 |
Q |
| |
|
||||||||||| |||||||||||||||| |||||| || ||||||||||||||||||||||| | || | |||||| | |||| |||||| ||||| | |
|
|
| T |
938992 |
aatcatagttggagatcagtagaaagaacactgaaaataatcatatctctgctttttcctttcatgaccaaatacttcccaagagttccctccttttgga |
939091 |
T |
|
| Q |
667 |
aaccaactttctcaagtactctttgcgacccaacattatccacatcaacaagagcttcaagcctttccaaatatgaaaattcactgaatgcaa |
759 |
Q |
| |
|
||||| ||||||| | || ||||| || |||||||| ||||||||||||| |||||||| |||||||| | ||| || ||||||||||||| |
|
|
| T |
939092 |
aaccagctttctccaaaaccctttgagatccaacattttccacatcaacaaaagcttcaactctttccaagtgtgacaactcactgaatgcaa |
939184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 82 - 123
Target Start/End: Original strand, 926968 - 927009
Alignment:
| Q |
82 |
attatccaatagatttcatgagatattgaaaaatcatagata |
123 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||| ||||||| |
|
|
| T |
926968 |
attatccaatggatttcatgagatattgaaaaattatagata |
927009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 591 - 741
Target Start/End: Original strand, 46648016 - 46648166
Alignment:
| Q |
591 |
agaagactgaacatgatcatatctctgctttttcctttaaagaatacatactttctaagaactccctcgttttgaaaaccaactttctcaagtactcttt |
690 |
Q |
| |
|
|||| ||||||||| | ||||||||| |||||||| || ||| | ||| ||||| ||||| ||||| ||||||||||| | ||||| | |||||| | |
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|
| T |
46648016 |
agaatactgaacataaccatatctctactttttcccttgctgaacagatattttctgagaacaccctccctttgaaaaccagccttctccaatactctct |
46648115 |
T |
|
| Q |
691 |
gcgacccaacattatccacatcaacaagagcttcaagcctttccaaatatg |
741 |
Q |
| |
|
| || | | ||| ||||||||||| ||||||||||||||||||| |||| |
|
|
| T |
46648116 |
gagaagccatattttccacatcaacttgagcttcaagcctttccaagtatg |
46648166 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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