View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8927_low_11 (Length: 327)
Name: NF8927_low_11
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8927_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 282; Significance: 1e-158; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 1 - 318
Target Start/End: Original strand, 28506900 - 28507217
Alignment:
| Q |
1 |
tcacaatcagtgtttcaaaagacttgtcaggtggctcaacaagtcattaacatatttatcttgtctttccatattgacaaacaagtccttcatgttctta |
100 |
Q |
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| T |
28506900 |
tcacaatcagtgtttcaaaagacttgtaaggtggctcaacaagttattaacatatttatcttgtctttcaatattgacaaacaagtccttcatgttctta |
28506999 |
T |
|
| Q |
101 |
atattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctag |
200 |
Q |
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| T |
28507000 |
atattttctctatagatcattccctcttcttcaaccacaatcagcctaattgagtgagcaaccgaatcacttgtgaaagacccatctctctcatctctag |
28507099 |
T |
|
| Q |
201 |
gcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggc |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||| || |
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| T |
28507100 |
gcactgagtaccccatcttcttttcctccaacactcttgcatttattccttgatctgaaagatacgtcaacaacacaagtggcttctcatgttgaactgc |
28507199 |
T |
|
| Q |
301 |
ctctaccactgatgtcca |
318 |
Q |
| |
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||||||||| |||||||| |
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| T |
28507200 |
ctctaccaccgatgtcca |
28507217 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 163; E-Value: 5e-87
Query Start/End: Original strand, 48 - 318
Target Start/End: Original strand, 28494401 - 28494671
Alignment:
| Q |
48 |
taacatatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcct |
147 |
Q |
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| T |
28494401 |
taacatatctatcttgtctttcaggattgacaaacaaatccttcatgttcttaatattatccctatagatccttccctcttcttcaaccataactaacct |
28494500 |
T |
|
| Q |
148 |
aattgagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttatt |
247 |
Q |
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||| |||||||| || ||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||| |
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| T |
28494501 |
aatcgagtgagccaccatatcacttgtgaaagacccatctctctcatctctaggcactgagtatcccatcttcttttcttccaacattcttgcatttatt |
28494600 |
T |
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| Q |
248 |
ccttgatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccactgatgtcca |
318 |
Q |
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| T |
28494601 |
ccttgatctgcaagacacgttaacaacacaagtggcttctcatgttgaactgcttctaccaccgatgtcca |
28494671 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 52 - 318
Target Start/End: Original strand, 28491086 - 28491352
Alignment:
| Q |
52 |
atatttatcttgtctttccatattgacaaacaagtccttcatgttcttaatattttctctatagatcattccctcttcttcaaccacaatcagcctaatt |
151 |
Q |
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|||| ||||||||||||| |||||||||||||||||||||| | ||||||||||| ||||| ||| | || |||||||||| || || || |||||| |
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| T |
28491086 |
atatctatcttgtctttcaatattgacaaacaagtccttcacctctttaatattttccctatatatcctcccttcttcttcaagcataactagtctaatt |
28491185 |
T |
|
| Q |
152 |
gagtgagcaactgaatcacttgtgaaagacccatctctctcatctctaggcactgagtaccccatcttcttttcctccaacactcttgcatttattcctt |
251 |
Q |
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| | |||| ||||| ||||||||||| ||||||||| ||||||||||||||| | ||| ||||||||||||| |||||||| | ||||||||||| | |
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| T |
28491186 |
gtgcgagccactgagtcacttgtgaatgacccatcttgctcatctctaggcaccgtgtatgccatcttcttttcttccaacaccttcgcatttattccct |
28491285 |
T |
|
| Q |
252 |
gatctgcaagatacgtcaacaacacaagtggcttctcattctgaacggcctctaccactgatgtcca |
318 |
Q |
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| ||| ||||| | |||| |||||||||||||||||| || ||||| || || |||||||||||||| |
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| T |
28491286 |
ggtctacaagaaatgtcatcaacacaagtggcttctcgttttgaactgcttccaccactgatgtcca |
28491352 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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