View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8927_low_12 (Length: 315)
Name: NF8927_low_12
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8927_low_12 |
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Alignment Details
Target: chr4 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 11 - 298
Target Start/End: Original strand, 45466308 - 45466595
Alignment:
| Q |
11 |
tggtgttgggaaaactgctgttgttgaagggttggctcagaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggat |
110 |
Q |
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| T |
45466308 |
tggtgttgggaaaactgctgttgttgaagggttggctcagaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggat |
45466407 |
T |
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| Q |
111 |
atgggagcattggttgctggtgcgaagtataggggagaatttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattc |
210 |
Q |
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| T |
45466408 |
atgggagcattggttgctggtgcgaagtataggggagaatttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattc |
45466507 |
T |
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| Q |
211 |
tttttattgatgagattcatcttgttcttggagctggtagaacagaaggatcaatggatgctgctaatctttttaagccaatgcttgc |
298 |
Q |
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| T |
45466508 |
ttttcattgatgagattcatcttgttcttggagctggtagaacagaaggatcaatggatgctgctaatctttttaagccaatgcttgc |
45466595 |
T |
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Target: chr7 (Bit Score: 143; Significance: 4e-75; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 143; E-Value: 4e-75
Query Start/End: Original strand, 12 - 298
Target Start/End: Original strand, 10044197 - 10044483
Alignment:
| Q |
12 |
ggtgttgggaaaactgctgttgttgaagggttggctcagaggattgttagaggtgatgttcctagcaatcttgctgatgttaggttaattgctctggata |
111 |
Q |
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| T |
10044197 |
ggtgttggtaaaacagctgttgttgaagggctggctaagagaatagttagaggagatgttcctagcaatcttgctgatgttaggttatttgctttggata |
10044296 |
T |
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| Q |
112 |
tgggagcattggttgctggtgcgaagtataggggagaatttgaagagaggttgaaggctgttttgaaagaagttgaagaagctgaagggaaggttattct |
211 |
Q |
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| T |
10044297 |
tgggagcgttagtcgctggtactcagtataggggacaatttgaacaaaggttgaaggcagttttgaaagaagtggaagatgctgaagggaaggttattgt |
10044396 |
T |
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| Q |
212 |
ttttattgatgagattcatcttgttcttggagctggtagaacagaaggatcaatggatgctgctaatctttttaagccaatgcttgc |
298 |
Q |
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| T |
10044397 |
tttcattgatgaaattcatcttgttctcggtgccggtcaatgtcaaggatcaatggatgctgctaatcttttgaaacctatgcttgc |
10044483 |
T |
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