View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8927_low_17 (Length: 235)

Name: NF8927_low_17
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8927_low_17
NF8927_low_17
[»] chr7 (7 HSPs)
chr7 (1-208)||(23983290-23983497)
chr7 (27-130)||(9107308-9107410)
chr7 (1-82)||(36449287-36449367)
chr7 (168-211)||(36449164-36449207)
chr7 (114-200)||(8745244-8745330)
chr7 (35-203)||(3478440-3478607)
chr7 (28-100)||(9427935-9428007)
[»] chr2 (13 HSPs)
chr2 (1-226)||(10173368-10173593)
chr2 (35-208)||(16952207-16952380)
chr2 (35-208)||(17022872-17023045)
chr2 (35-208)||(17060178-17060351)
chr2 (18-139)||(20572226-20572346)
chr2 (114-200)||(34230292-34230378)
chr2 (1-75)||(12343037-12343110)
chr2 (114-200)||(7696053-7696139)
chr2 (1-71)||(27879941-27880011)
chr2 (128-198)||(41086715-41086785)
chr2 (1-45)||(4974992-4975037)
chr2 (1-45)||(4992900-4992945)
chr2 (23-99)||(27740153-27740229)
[»] chr1 (12 HSPs)
chr1 (1-208)||(16577344-16577552)
chr1 (1-197)||(41126278-41126462)
chr1 (1-71)||(38548865-38548934)
chr1 (1-81)||(16148987-16149067)
chr1 (114-200)||(16147649-16147735)
chr1 (1-75)||(32882584-32882659)
chr1 (114-200)||(6583120-6583206)
chr1 (114-200)||(31290923-31291009)
chr1 (1-71)||(38544544-38544613)
chr1 (3-82)||(10785252-10785330)
chr1 (47-75)||(24659146-24659174)
chr1 (23-99)||(49820311-49820387)
[»] chr5 (6 HSPs)
chr5 (2-217)||(17853861-17854073)
chr5 (1-147)||(26045752-26045901)
chr5 (1-82)||(33258668-33258750)
chr5 (23-71)||(24072094-24072142)
chr5 (169-217)||(24072226-24072274)
chr5 (26-74)||(39024259-39024306)
[»] chr6 (4 HSPs)
chr6 (1-208)||(32935131-32935337)
chr6 (117-200)||(20701710-20701793)
chr6 (26-134)||(21266263-21266369)
chr6 (23-99)||(33968443-33968518)
[»] chr4 (7 HSPs)
chr4 (26-130)||(12296322-12296426)
chr4 (5-203)||(19673188-19673387)
chr4 (5-203)||(19815014-19815213)
chr4 (23-82)||(48098546-48098606)
chr4 (1-82)||(22810949-22811029)
chr4 (114-200)||(49528163-49528249)
chr4 (26-71)||(46487477-46487522)
[»] chr3 (5 HSPs)
chr3 (57-200)||(39021122-39021267)
chr3 (23-226)||(823246-823450)
chr3 (23-82)||(14879648-14879708)
chr3 (114-200)||(25647777-25647863)
chr3 (50-95)||(23328188-23328233)
[»] chr8 (2 HSPs)
chr8 (35-116)||(17720545-17720626)
chr8 (114-200)||(17656906-17656992)
[»] scaffold1613 (1 HSPs)
scaffold1613 (1-71)||(823-892)


Alignment Details
Target: chr7 (Bit Score: 148; Significance: 3e-78; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 23983497 - 23983290
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaat 100  Q
    ||||||||||||| ||||||| |||| ||||||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||||||||||||||||    
T  23983497 cctaaaacagactcattcacgaaaacaaccactgaaaaacgatatacataactacccatcatcactactcaccccaaaagaagaccgctctaaatgaaat 23983398  T
Q  101 tctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    ||||| ||||||||| ||||| ||||||| ||||||||| ||||||||||||| |||||||  || ||||||||||||||||||||||||||||||||||    
T  23983397 tctcggtcctcatcatcaaagctgaaccagatccgaaaagctcatattcgaaagatcattcaactgtcaccacctctcaacctccgatacaccgaaagaa 23983298  T
Q  201 cacaaaaa 208  Q
    ||||||||    
T  23983297 cacaaaaa 23983290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 27 - 130
Target Start/End: Complemental strand, 9107410 - 9107308
Alignment:
Q  27 gaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaa 126  Q
    ||||| || |||||||||| ||||||||||||||| ||||||||| ||| ||| ||  || ||||||||||||  | | ||||||||||||||||||||     
T  9107410 gaccattggaaaacgatatccataaccacccatcgccactactcatcccaaaataactcccctctaaatgaaacac-ccatcctcatcaccaaagttgag 9107312  T
Q  127 ccac 130  Q
    ||||    
T  9107311 ccac 9107308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 1 - 82
Target Start/End: Complemental strand, 36449367 - 36449287
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    ||||||| |||||  |||||| |||| ||| |||||||||||||| ||||||||| ||||||||||||||||| | ||||||    
T  36449367 cctaaaatagactacttcacg-aaacaaccgctgaaaaacgatatccataaccactcatcgtcactactcaccacaaaagaa 36449287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 168 - 211
Target Start/End: Complemental strand, 36449207 - 36449164
Alignment:
Q  168 caccacctctcaacctccgatacaccgaaagaacacaaaaataa 211  Q
    ||||||||||||||||||||| ||||||||||| || |||||||    
T  36449207 caccacctctcaacctccgatccaccgaaagaaaaccaaaataa 36449164  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 8745330 - 8745244
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||| ||| ||||||||||||| ||| |||  |||| ||||| | |||  ||| ||||||| ||||||||| |||||||||||    
T  8745330 caccaaagctgagccacatccgaaaagctcctatctgaaagatcatgcagcttccacaacctctcgacctccgatccaccgaaagaa 8745244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 35 - 203
Target Start/End: Complemental strand, 3478607 - 3478440
Alignment:
Q  35 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 134  Q
    |||| |||||| ||| |||| || ||||||||||||||||| |||||| ||  ||| |||| ||| || |  |||||| |||||||| | | |||  ||     
T  3478607 aaaagcgatatccatcaccaaccgtcgtcactactcacccc-aaagaacactcctcaaaattaaactcccagtcctcaacaccaaagcttagccaactca 3478509  T
Q  135 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacac 203  Q
    |||||  ||| || ||||| ||||||| |||  | ||||||||| | ||||||| ||||||||||||||    
T  3478508 gaaaagttcacatccgaaagatcattcagcttccgccacctctcgatctccgatccaccgaaagaacac 3478440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 28 - 100
Target Start/End: Original strand, 9427935 - 9428007
Alignment:
Q  28 accactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaat 100  Q
    |||||| ||||| ||||| ||||||||||| ||||||||||||| ||| ||| |  | | |||||||||||||    
T  9427935 accactaaaaaatgatatccataaccacccgtcgtcactactcatccctaaatagcatccctctaaatgaaat 9428007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 79; Significance: 5e-37; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 10173368 - 10173593
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    |||||||||||| | |||| | ||||||| |||| ||||||||||||||  ||||| ||||||||||||||||||| |||||| ||  ||| |||| |||    
T  10173368 cctaaaacagacgtcttcatgaaaacgactactgtaaaaacgatatacaacaccactcatcgtcactactcacccc-aaagaatactcctcaaaattaaa 10173466  T
Q  100 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 199  Q
     ||||  |||||| |||||||| ||| ||||||||||||| ||||||||| ||| |||||||  ||  ||||||||||| ||||||||| ||||||||||    
T  10173467 ctctcagtcctcaacaccaaagctgagccacatccgaaaagctcatattcaaaagatcattcaacttccaccacctctcgacctccgattcaccgaaaga 10173566  T
Q  200 acacaaaaataaccccaacaccaaact 226  Q
    |||| || | || ||||| ||||||||    
T  10173567 acaccaacaaaagcccaaaaccaaact 10173593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 16952207 - 16952380
Alignment:
Q  35 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 134  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  16952207 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 16952306  T
Q  135 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 208  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  16952307 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 16952380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 17022872 - 17023045
Alignment:
Q  35 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 134  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17022872 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17022971  T
Q  135 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 208  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17022972 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17023045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 35 - 208
Target Start/End: Original strand, 17060178 - 17060351
Alignment:
Q  35 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttgaaccacatcc 134  Q
    ||||| ||||| ||| ||||| ||||||||||||||||||| |||||| ||| |||||||||||| || |  |||||| |||||||||||| ||||||||    
T  17060178 aaaaaagatattcatcaccactcatcgtcactactcacccccaaagaacacccctctaaatgaaactcccagtcctcaacaccaaagttgatccacatcc 17060277  T
Q  135 gaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaa 208  Q
    ||||| ||| ||| ||||| ||| ||  |||  ||||||||||||||||||||| |||||||||||||| ||||    
T  17060278 gaaaagctcctatccgaaagatcgtttagcttccaccacctctcaacctccgatccaccgaaagaacaccaaaa 17060351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 18 - 139
Target Start/End: Complemental strand, 20572346 - 20572226
Alignment:
Q  18 cacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcacc 117  Q
    |||| ||||||||||||||||||||||| |||||||||| |||| ||||||||||| | |||||| ||| |||||||||||| ||||  ||||||||||     
T  20572346 cacgaaaacgaccactgaaaaacgatatccataaccacc-atcgccactactcacctcaaaagaacacccctctaaatgaaactctcattcctcatcact 20572248  T
Q  118 aaagttgaaccacatccgaaaa 139  Q
    |||| | ||||| |||||||||    
T  20572247 aaagctaaaccatatccgaaaa 20572226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 34230378 - 34230292
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||||||| ||||||| ||||| ||| |||| |||| ||||||| |||  ||||||||||||||||||||| |||||||||||    
T  34230378 caccaaagttgagccacatctgaaaagctcttatttgaaagatcattcagcttccaccacctctcaacctccgatccaccgaaagaa 34230292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 12343110 - 12343037
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcacccc 75  Q
    |||||||||||||  |||||| |||||||| ||| ||||||||||| ||  ||||| |||||||||||||||||||    
T  12343110 cctaaaacagactccttcacgaaaacgacctctgtaaaaacgatatcca--accactcatcgtcactactcacccc 12343037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 7696139 - 7696053
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||||||| ||||||||  ||| ||| ||| ||||| ||||||| |||  ||||||||| | |||| |||| |||||||||||    
T  7696139 caccaaagttgagccacatcctcaaatctcctatccgaaagatcattcagcttccaccacctcccgaccttcgatccaccgaaagaa 7696053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 27879941 - 27880011
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    |||||||||||||  |||| | |||||||| ||||||||||| || ||||||||| ||||  |||||||||    
T  27879941 cctaaaacagactccttcaggaaaacgacctctgaaaaacgaaatccataaccactcatcaccactactca 27880011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 198
Target Start/End: Original strand, 41086715 - 41086785
Alignment:
Q  128 cacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaag 198  Q
    ||||||| |||| ||| ||| ||||| ||||||| |||  ||||||||||| ||||||||| |||||||||    
T  41086715 cacatccaaaaagctcttatccgaaagatcattcagcttccaccacctctcgacctccgatccaccgaaag 41086785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4975037 - 4974992
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 45  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||    
T  4975037 cctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4974992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 4992945 - 4992900
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatat 45  Q
    |||||||||||||| |||||| |||||||||||| |||||||||||    
T  4992945 cctaaaacagacttcttcacgaaaacgaccactgtaaaaacgatat 4992900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 27740229 - 27740153
Alignment:
Q  23 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    |||| ||||||||| |||||||| ||||||||| | ||| ||||||||| |||  || || ||| ||||||||||||    
T  27740229 aaactaccactgaagaacgatattcataaccactcgtcgccactactcatcccagaataacacccctctaaatgaaa 27740153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 73; Significance: 2e-33; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 1 - 208
Target Start/End: Complemental strand, 16577552 - 16577344
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaac-gatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    |||||||||||||  |||||| ||||||||||| |||||  ||||| ||||||||  ||||||| |||||||| || |||||| ||| ||||||| ||||    
T  16577552 cctaaaacagactctttcacgaaaacgaccactcaaaaaatgatatccataaccattcatcgtccctactcactccaaaagaacacccctctaaaagaaa 16577453  T
Q  100 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaaga 199  Q
     | ||  ||  ||||||||||||||| ||||||||||||| ||| ||||| ||| ||||||| |||  |||||||||||||||||| ||  |||||||||    
T  16577452 ctttcagtcaccatcaccaaagttgagccacatccgaaaagctcctattccaaagatcattcagcttccaccacctctcaacctccaatctaccgaaaga 16577353  T
Q  200 acacaaaaa 208  Q
    || ||||||    
T  16577352 acgcaaaaa 16577344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 197
Target Start/End: Original strand, 41126278 - 41126462
Alignment:
Q  1 cctaaaacagacttattcacgtaaacga-ccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    ||||||||||||  ||||||| |||| | |||||| |||||||||| ||| |||||||||||||||||||||||||             |||||||||||    
T  41126278 cctaaaacagacgcattcacgaaaacaaaccactgtaaaacgatatccatcaccacccatcgtcactactcacccc-------------tctaaatgaaa 41126364  T
Q  100 ttctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaa 197  Q
     ||||  ||||||||||||||||||| ||||||| ||||| ||| ||| | ||| ||| ||| |||  || ||||||||||||||| || ||||||||    
T  41126365 ctctcagtcctcatcaccaaagttgatccacatctgaaaagctcctatccaaaagatcgttcagcttccagcacctctcaacctccaatccaccgaaa 41126462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38548865 - 38548934
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    |||||||||||||  |||||| |||||| |||||||||||||||| |||||||||||||||||||||||||    
T  38548865 cctaaaacagactctttcacg-aaacgatcactgaaaaacgatattcataaccacccatcgtcactactca 38548934  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 81
Target Start/End: Complemental strand, 16149067 - 16148987
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaaga 81  Q
    ||||||||||||   |||| ||||||||| ||||||||||||||| || || ||||||||||||||||||||||| |||||    
T  16149067 cctaaaacagacaccttcatgtaaacgactactgaaaaacgatatccaaaagcacccatcgtcactactcacccccaaaga 16148987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 16147735 - 16147649
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||| ||| ||||||||||||| |||||||  |||| |||||||  || |||||||||||| |||||||||  ||||||||||    
T  16147735 caccaaagctgagccacatccgaaaagctcatatctgaaagatcattcaactttcaccacctctccacctccgatctaccgaaagaa 16147649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 75
Target Start/End: Complemental strand, 32882659 - 32882584
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaa-acgatatacataaccacccatcgtcactactcacccc 75  Q
    |||||||| ||||  |||||| |||||| ||||| ||| ||||||| ||  |||||||||||||||||||||||||    
T  32882659 cctaaaactgactccttcacgaaaacgagcactgtaaacacgatatccaacaccacccatcgtcactactcacccc 32882584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 6583120 - 6583206
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||| ||| || |||||||||| ||| |||  |||| |||| || |||  ||||||||||| ||||||||| |||||||||||    
T  6583120 caccaaagctgagccgcatccgaaaagctcctatctgaaagatcaatcagcttccaccacctctcgacctccgattcaccgaaagaa 6583206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 31290923 - 31291009
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||| ||| ||||||||||||| ||| ||| ||||| ||||  |  ||  ||||||||||| ||||||||| |||||||||||    
T  31290923 caccaaagctgagccacatccgaaaagctcctatccgaaagatcaagcaacttccaccacctctcgacctccgatccaccgaaagaa 31291009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 38544544 - 38544613
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    |||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  38544544 cctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 38544613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 3 - 82
Target Start/End: Original strand, 10785252 - 10785330
Alignment:
Q  3 taaaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    |||||||||||  |||||| |||||||  |||||||| |||||| ||  ||||||||||||||||||||| |||| |||||    
T  10785252 taaaacagactccttcacgaaaacgacatctgaaaaaacgatatcca--accacccatcgtcactactcatcccgcaagaa 10785330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 47 - 75
Target Start/End: Complemental strand, 24659174 - 24659146
Alignment:
Q  47 cataaccacccatcgtcactactcacccc 75  Q
    |||||||||||||||||||||||||||||    
T  24659174 cataaccacccatcgtcactactcacccc 24659146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Complemental strand, 49820387 - 49820311
Alignment:
Q  23 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    |||||| |||||||||||||||| ||||||||||| ||| ||| || || ||| ||| |  ||| ||||||||||||    
T  49820387 aaacgagcactgaaaaacgatatccataaccacccgtcgccaccacacatcccaaaatatcacccctctaaatgaaa 49820311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 68; Significance: 2e-30; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 2 - 217
Target Start/End: Original strand, 17853861 - 17854073
Alignment:
Q  2 ctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaatt 101  Q
    ||||||||||||  || ||| |||||| |||||||||||||||| ||||||||||||||  ||||||||||||| |||| ||||  ||||||||||||      
T  17853861 ctaaaacagactcctttacg-aaacgatcactgaaaaacgatatccataaccacccatcaccactactcaccccaaaagtagacacctctaaatgaaaca 17853959  T
Q  102 ctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaac 201  Q
    | | ||||||||||||| || ||| |||||||||||||  |||||||| ||| |||||||  ||  |||||||||||||| || | | ||||||||||||    
T  17853960 c-caatcctcatcaccatagctgagccacatccgaaaa-gtcatattctaaagatcattcaacttccaccacctctcaacttcaggtccaccgaaagaac 17854057  T
Q  202 acaaaaataaccccaa 217  Q
    |  ||||||| |||||    
T  17854058 attaaaataagcccaa 17854073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 147
Target Start/End: Original strand, 26045752 - 26045901
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccga--aagaagaccgctctaaatga 97  Q
    |||||||||||||| |||| | ||| |||||| | |||||||| || ||  ||| ||||||||||||||||||||| |  || || ||| ||| |||| |    
T  26045752 cctaaaacagacttcttcatgaaaatgaccacggtaaaaacgaaatccaacacctcccatcgtcactactcaccccaaagaaaaacacccctcaaaatta 26045851  T
Q  98 aattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatat 147  Q
    || |||| ||||| | ||||||||||||  ||| |||||||| |||||||    
T  26045852 aactctcaatcctaaacaccaaagttgagtcacctccgaaaagctcatat 26045901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 33258668 - 33258750
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    |||||||||||  | |||||| || ||||||||| ||||||||||| ||  |||| |||||| ||||||||||||| ||||||    
T  33258668 cctaaaacagatctcttcacgaaagcgaccactgtaaaaacgatatccaataccatccatcgccactactcacccctaaagaa 33258750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 71
Target Start/End: Original strand, 24072094 - 24072142
Alignment:
Q  23 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    ||||||||||| |||||||||||  || | |||||||||||||||||||    
T  24072094 aaacgaccactaaaaaacgatatctatgatcacccatcgtcactactca 24072142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 169 - 217
Target Start/End: Original strand, 24072226 - 24072274
Alignment:
Q  169 accacctctcaacctccgatacaccgaaagaacacaaaaataaccccaa 217  Q
    ||||||| |||||||||| | |||||||||||||| |||| ||||||||    
T  24072226 accacctttcaacctccggtccaccgaaagaacaccaaaaaaaccccaa 24072274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 74
Target Start/End: Original strand, 39024259 - 39024306
Alignment:
Q  26 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccc 74  Q
    |||||| ||||||||||||| ||||| ||| ||||||||||||||||||    
T  39024259 cgaccattgaaaaacgatatccataa-cactcatcgtcactactcaccc 39024306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 56; Significance: 2e-23; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 1 - 208
Target Start/End: Original strand, 32935131 - 32935337
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaat 100  Q
    ||||||| |||||  || ||| ||||| || || |||||||||||||||||||||||||| |||||||| ||||| ||| || | | ||||||||||||     
T  32935131 cctaaaatagactccttaacgaaaacgccccctcaaaaacgatatacataaccacccatcatcactactgacccc-aaaaaacatccctctaaatgaaac 32935229  T
Q  101 tctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    || |  | ||||||||||||| |||   ||||||||||| ||||| ||||||| ||||| | |||  ||||||||| ||||||  ||  |||||||||||    
T  32935230 tcacagtgctcatcaccaaagctgagttacatccgaaaaactcatgttcgaaagatcatgcagcttccaccacctcccaacctttgaaccaccgaaagaa 32935329  T
Q  201 cacaaaaa 208  Q
    ||| ||||    
T  32935330 cactaaaa 32935337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 117 - 200
Target Start/End: Original strand, 20701710 - 20701793
Alignment:
Q  117 caaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    ||||||||| |||||| |||||| ||| ||| ||||| ||||||| |||  ||| ||||||| ||||||||| |||||||||||    
T  20701710 caaagttgagccacattcgaaaagctcctatccgaaagatcattcagcttccactacctctcgacctccgatccaccgaaagaa 20701793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 26 - 134
Target Start/End: Complemental strand, 21266369 - 21266263
Alignment:
Q  26 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 125  Q
    ||||||||||||||||| || || ||| ||| |||||||||||||||||| || ||| |||| | |||| ||||  ||| ||||||| |||||||  |||    
T  21266369 cgaccactgaaaaacgacatccagaacaacc-atcgtcactactcaccccaaaggaacaccgttgtaaaagaaa-actcaatcctcaacaccaaaactga 21266272  T
Q  126 accacatcc 134  Q
     ||||||||    
T  21266271 gccacatcc 21266263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 23 - 99
Target Start/End: Original strand, 33968443 - 33968518
Alignment:
Q  23 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaa 99  Q
    ||||||||||||||||| | ||| ||||||||  |||| |||||||||| ||| ||| || ||| ||||||||||||    
T  33968443 aaacgaccactgaaaaatggtatccataacca-gcatcatcactactcatcccaaaataacacccctctaaatgaaa 33968518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 53; Significance: 1e-21; HSPs: 7)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 26 - 130
Target Start/End: Complemental strand, 12296426 - 12296322
Alignment:
Q  26 cgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcaccaaagttga 125  Q
    |||||||||||||||||||| ||||||||||||||| ||||||||| ||| ||| || ||| ||||||||||||  |||  ||||||||||| |||||||    
T  12296426 cgaccactgaaaaacgatatccataaccacccatcgccactactcatcccaaaataacacccctctaaatgaaacactccgtcctcatcacctaagttga 12296327  T
Q  126 accac 130  Q
     ||||    
T  12296326 gccac 12296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 5 - 203
Target Start/End: Complemental strand, 19673387 - 19673188
Alignment:
Q  5 aaacagacttattcacgtaaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattct 103  Q
    |||||||| | |||||| ||| |||||||| |||| | |||| ||  |||| || ||||||||||||||||| |||||| ||  ||| |||| ||| |||    
T  19673387 aaacagacgtcttcacgaaaatgaccactgtaaaagcaatatccaacaccatccgtcgtcactactcacccccaaagaacactcctcaaaattaaactct 19673288  T
Q  104 cgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacac 203  Q
    |  |||||| |||||||||| | |||||||||||||  |||||| | ||||||||||  |||  ||||| || || |||  |||| ||||||||||||||    
T  19673287 cagtcctcaacaccaaagtttagccacatccgaaaagttcatatccaaaatatcatttagcttccaccatctatcgaccgtcgatccaccgaaagaacac 19673188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 203
Target Start/End: Original strand, 19815014 - 19815213
Alignment:
Q  5 aaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattct 103  Q
    |||||||| | |||||| ||| |||||| | ||||| ||||| ||  |||| || | ||||||||||||||| |||||| ||  ||| | || ||| |||    
T  19815014 aaacagacgtcttcacgaaaatgaccacggtaaaaatgatatccaataccatccgttgtcactactcacccccaaagaacacttctcaagattaaactct 19815113  T
Q  104 cgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacac 203  Q
    |  |||||| |||||||||| | ||||||| |||||  || ||| ||||| ||||||  |||  ||||| ||||| ||||||| | ||||||||||||||    
T  19815114 cagtcctcaacaccaaagtttagccacatcggaaaagttcctatccgaaagatcatttagcttccaccatctctcgacctccggtccaccgaaagaacac 19815213  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 48098606 - 48098546
Alignment:
Q  23 aaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    |||||||||||| ||||||||||| ||| || |||| ||||||||||||||||| ||||||    
T  48098606 aaacgaccactgtaaaaacgatatccatcacaacccgtcgtcactactcacccccaaagaa 48098546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 82
Target Start/End: Original strand, 22810949 - 22811029
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactg-aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    |||||||||||||  |||||| || ||||||||| ||||||||||| |   |||| |||||||||||||||||||| ||||||    
T  22810949 cctaaaacagactgcttcacgaaaccgaccactgtaaaaacgatatcct--accatccatcgtcactactcacccccaaagaa 22811029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 49528249 - 49528163
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||| ||||||||||||| ||| ||  ||| ||||| |||||||  ||  ||||||||| | ||||||||| |||||||||||    
T  49528249 caccaaagctgaaccacatccgcaaagcttctatccgaaagatcattcatcttccaccacctcccgacctccgatccaccgaaagaa 49528163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 26 - 71
Target Start/End: Complemental strand, 46487522 - 46487477
Alignment:
Q  26 cgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    |||||||||||||||||||| |||||||||  |||| |||||||||    
T  46487522 cgaccactgaaaaacgatattcataaccacatatcgccactactca 46487477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 57 - 200
Target Start/End: Original strand, 39021122 - 39021267
Alignment:
Q  57 catcgtcactactcaccccgaaagaagaccgc-tctaaatgaaattctcgatcctcatcaccaaagttgaaccacatccgaaaacctcatattcg-aaat 154  Q
    |||||||||||||||| || ||||||   ||| || |||||||| ||||  |||||| |||||||| | | ||||||||||||| ||||||| || |||     
T  39021122 catcgtcactactcacacccaaagaaacacgcgtcaaaatgaaactctcagtcctcaacaccaaagctaagccacatccgaaaaactcatatccgaaaag 39021221  T
Q  155 atcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||| || |||| ||||| ||||| ||||||||| |||| ||||||    
T  39021222 atcaatcagctaccaccatctctcgacctccgatccaccaaaagaa 39021267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 226
Target Start/End: Original strand, 823246 - 823450
Alignment:
Q  23 aaacgaccactgaaaaacgatatacataaccacccatcgtcactactcaccccgaaag-aagaccgctctaaatgaaattctcgatcctcatcaccaaag 121  Q
    |||| |||||||||||||||||| ||||||||||| ||| | ||||||||||  |||| || ||| |||||| | |||  |    |||| || |||| |     
T  823246 aaacaaccactgaaaaacgatatccataaccacccttcgcctctactcaccctaaaagaaacacctctctaattcaaacaccatgtccttattaccataa 823345  T
Q  122 ttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaacacaaaaataaccccaacacc 221  Q
    |||| ||||||| |||||  || ||||  ||| ||||||| |||  | ||||||||||||||| | |  ||||||||||||| ||||||| ||||| ||     
T  823346 ttgagccacatctgaaaatgtcctattgaaaagatcattcagcttccgccacctctcaacctctggtctaccgaaagaacaccaaaataagcccaaaaca 823445  T
Q  222 aaact 226  Q
    |||||    
T  823446 aaact 823450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 82
Target Start/End: Complemental strand, 14879708 - 14879648
Alignment:
Q  23 aaacgaccactgaaaaa-cgatatacataaccacccatcgtcactactcaccccgaaagaa 82  Q
    ||||||||||||||||| |||||| ||  ||||| ||||||||||| ||||||||||||||    
T  14879708 aaacgaccactgaaaaaacgatatccaacaccacacatcgtcactattcaccccgaaagaa 14879648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Complemental strand, 25647863 - 25647777
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||  ||| |||| |||||||| ||||||  ||||| |||||||  || |||||||||||| ||||||||| |||| ||||||    
T  25647863 caccaaaactgagccacgtccgaaaagctcataaccgaaagatcattcaactttcaccacctctcgacctccgatccaccaaaagaa 25647777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 50 - 95
Target Start/End: Original strand, 23328188 - 23328233
Alignment:
Q  50 aaccacccatcgtcactactcaccccgaaagaagaccgctctaaat 95  Q
    |||||||||||||||||||||||||| |||||| ||| ||| ||||    
T  23328188 aaccacccatcgtcactactcacccccaaagaacaccactcaaaat 23328233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 34; Significance: 0.0000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 116
Target Start/End: Original strand, 17720545 - 17720626
Alignment:
Q  35 aaaaacgatatacataaccacccatcgtcactactcaccccgaaagaagaccgctctaaatgaaattctcgatcctcatcac 116  Q
    ||||| |||||||||||||||  |||||||||||||||||| |||  | ||| ||||||||||||  |||  ||||||||||    
T  17720545 aaaaaagatatacataaccacatatcgtcactactcaccccaaaaataaacccctctaaatgaaacactccgtcctcatcac 17720626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 114 - 200
Target Start/End: Original strand, 17656906 - 17656992
Alignment:
Q  114 caccaaagttgaaccacatccgaaaacctcatattcgaaatatcattccgctatcaccacctctcaacctccgatacaccgaaagaa 200  Q
    |||||||||||| |||| || ||||| ||| |||  |||| ||||||| |||  |||||||| || ||||||||| |||||||||||    
T  17656906 caccaaagttgagccacctctgaaaagctcctatatgaaagatcattcagcttccaccacctatcgacctccgatccaccgaaagaa 17656992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1613 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1613
Description:

Target: scaffold1613; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 71
Target Start/End: Original strand, 823 - 892
Alignment:
Q  1 cctaaaacagacttattcacgtaaacgaccactgaaaaacgatatacataaccacccatcgtcactactca 71  Q
    |||||||||||||  |||||| ||  || ||||| |||||||||| ||||||||| |||||||||||||||    
T  823 cctaaaacagactctttcacggaat-gatcactggaaaacgatatccataaccactcatcgtcactactca 892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University