View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8927_low_3 (Length: 567)
Name: NF8927_low_3
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8927_low_3 |
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Alignment Details
Target: chr4 (Bit Score: 512; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 512; E-Value: 0
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 45276142 - 45276692
Alignment:
| Q |
1 |
tcagaagaacaaagttttcaacagtattgctgattgcatactataattgtaaagtgtgcatactataattgtaaagataaaggacaaataccccaatacg |
100 |
Q |
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| T |
45276142 |
tcagaagaaccaagttttcaacagtattgctgattgcatactataattgtaaagtgtgcatactataattgtaaagataaaggacaaataccccaatatg |
45276241 |
T |
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| Q |
101 |
gaaatactcgtttctaatgaagtcacaggacaacataataatagataaaccaacaaaaatccatcaacaccacttgtctcacaagaatctataagacaca |
200 |
Q |
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| T |
45276242 |
gaaatactcgtttctaatgaagtcacaggacaacataataaaagataaaccaacaaaaatccatcaacaccacttgtctcacaagaatctataagacaca |
45276341 |
T |
|
| Q |
201 |
tctcttaaacaaaacaaaatgaaagcttagagaaatgatcatagcaaacaacaaaacaaataggtagaaatataagttagttctttccaccaatatcctt |
300 |
Q |
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| T |
45276342 |
tctcttgaacaaaacaaaatgaaagcttagagaaatgatcatagcaaacaacaaaacaaataggtagaa-tataagttagttctttccaccaatatcctt |
45276440 |
T |
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| Q |
301 |
cgaagcacagatctgctcctcacccatagcagacataacggacacgacaaggtcctttccctcagcaaatccatccttgatctataaacaatgcaaaaac |
400 |
Q |
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| T |
45276441 |
caaagcacagatctgctcctcacccatagcagacataacggacacgacaaggtcctttccctcagcaaatccatccttgatctataaacaaagcaaaaac |
45276540 |
T |
|
| Q |
401 |
caatcaacacataatcaatcagatgatacaaagacatgtaatcaaatccattttagccaaaatcaatcaaatgatacagagacacaatgcaacatcagtt |
500 |
Q |
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| T |
45276541 |
caatcaacacataatcaatcagatgatacaaagacatgtaagcaaatccattttagccaaaatcaatcaaatgatacaaagacacaatgcaacatcagtt |
45276640 |
T |
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| Q |
501 |
ctgtacctgagtgagcagactgtcatcggtgggaagtttgaggtcatccttg |
552 |
Q |
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| T |
45276641 |
ctgtacctgagtgagcagactgtcatcggtgggaagtttgaggtcatccttg |
45276692 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 289 - 385
Target Start/End: Original strand, 54579489 - 54579585
Alignment:
| Q |
289 |
accaatatccttcgaagcacagatctgctcctcacccatagcagacataacggacacgacaaggtcctttccctcagcaaatccatccttgatctat |
385 |
Q |
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| T |
54579489 |
accaatgtccttcagagcacatatctgctcttcacccatcgcagacatgacagaaaccacgagatcttttccatcagcaaatccatctttaatctat |
54579585 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 311 - 383
Target Start/End: Complemental strand, 12830959 - 12830887
Alignment:
| Q |
311 |
atctgctcctcacccatagcagacataacggacacgacaaggtcctttccctcagcaaatccatccttgatct |
383 |
Q |
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||||||||||||||||| | |||||| || ||||| ||||||||||| ||||||||||| || |||||||||| |
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| T |
12830959 |
atctgctcctcacccattgaagacatcacagacacaacaaggtccttaccctcagcaaaaccttccttgatct |
12830887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 34; Significance: 0.0000000008; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 306 - 383
Target Start/End: Original strand, 18905546 - 18905623
Alignment:
| Q |
306 |
cacagatctgctcctcacccatagcagacataacggacacgacaaggtcctttccctcagcaaatccatccttgatct |
383 |
Q |
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|||| |||||||||||||||||||||||||| || ||||| | || || || || ||| |||||||||||||||||| |
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| T |
18905546 |
cacaaatctgctcctcacccatagcagacatgacagacacaatcagatctttaccttcaccaaatccatccttgatct |
18905623 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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