View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8927_low_8 (Length: 378)
Name: NF8927_low_8
Description: NF8927
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8927_low_8 |
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Alignment Details
Target: chr8 (Bit Score: 344; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 344; E-Value: 0
Query Start/End: Original strand, 17 - 364
Target Start/End: Original strand, 13973802 - 13974149
Alignment:
| Q |
17 |
tgtgctgtaccagtgtgaaggtaatgaagacctcttgccgatccaatgcaaatgtccaacctttgtttccaagaaagtgctggcatgttctttccataaa |
116 |
Q |
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| T |
13973802 |
tgtgccgtaccagtgtgaaggtaatgaagacctcttgccgatccaatgcaaatgtccaacctttgtttccaagaaagtgctggcatgttctttccataaa |
13973901 |
T |
|
| Q |
117 |
gatgatctctaagatgtccattaggcatgtactcataaacaagaatcatttcttcattttcatcacaatatccaatcattgaaaccaaatgtctatgtct |
216 |
Q |
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| T |
13973902 |
gatgatctctaagatgtccattaggcatgtactcataaacaagaatcatttcttcattttcatcacaatatccaatcattgaaaccaaatgtctatgtct |
13974001 |
T |
|
| Q |
217 |
aagcttagacaacatttggatttcagtctggaattcattgataccttgttctgattgtggatttcctctcttgacagcaacttgaaccccttcatcaatc |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
13974002 |
aagcttagacaacatttggatttcagtctggaattcattgataccttgttctgattgtggatttcctctcttgacagcaacttgaaccccttcatcaatc |
13974101 |
T |
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| Q |
317 |
acacctaaataaacattaccaaaaccaccaacaccaataatgtttttg |
364 |
Q |
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| T |
13974102 |
acacctaaataaacattaccaaaaccaccaacaccaataatgtttttg |
13974149 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 29 - 87
Target Start/End: Original strand, 35904668 - 35904726
Alignment:
| Q |
29 |
gtgtgaaggtaatgaagacctcttgccgatccaatgcaaatgtccaacctttgtttcca |
87 |
Q |
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| T |
35904668 |
gtgtgaaggtaatgaagacctcttgcagcaccaatgcaaatctccaacctttgcttcca |
35904726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 133 - 321
Target Start/End: Original strand, 35904778 - 35904966
Alignment:
| Q |
133 |
tccattaggcatgtactcataaacaagaatcatttcttcattttcatcacaatatccaatcattgaaaccaaatgtctatgtctaagcttagacaacatt |
232 |
Q |
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||||| || |||||| |||||||| | | |||||| |||| ||| |||||| | ||||||| || || |||||| ||||||||||||| || | ||| |
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| T |
35904778 |
tccatgagccatgtaatcataaaccaaacacatttcctcatcttcctcacaaaaaccaatcaaagacactaaatgtttatgtctaagctttgaaagcatc |
35904877 |
T |
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| Q |
233 |
tggatttcagtctggaattcattgataccttgttctgattgtggatttcctctcttgacagcaacttgaaccccttcatcaatcacacc |
321 |
Q |
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| T |
35904878 |
tcaatttcagtttgaaattcatttactccttgttctgattgtggatttgatctcttaatagccactttaacaccattatcaataacacc |
35904966 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 26 - 66
Target Start/End: Original strand, 41048770 - 41048810
Alignment:
| Q |
26 |
ccagtgtgaaggtaatgaagacctcttgccgatccaatgca |
66 |
Q |
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| T |
41048770 |
ccagtgtgaaggtaatgaagtcctctggcagatccaatgca |
41048810 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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