View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_high_12 (Length: 263)
Name: NF8928_high_12
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_high_12 |
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Alignment Details
Target: chr6 (Bit Score: 211; Significance: 1e-116; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 211; E-Value: 1e-116
Query Start/End: Original strand, 10 - 245
Target Start/End: Complemental strand, 15865048 - 15864813
Alignment:
| Q |
10 |
aggagcagagatgaagaaattatccgactctttatggaaaaacaaaaggatgtctctggatgattttctaggaaatacagaagcaagtataggtacggtt |
109 |
Q |
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| T |
15865048 |
aggagtagagatgaagaaattatccgactctttatggaaaaacaaaaggatgtctctggatgattttctaggaaatacagaagcaagtataggtacggtt |
15864949 |
T |
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| Q |
110 |
gttgatgctcgtatttgcaggcttctgtgaattgatccatcttctgctgcttatcttgctgctgaatgtttaggttggagtattgattaatgnnnnnnnt |
209 |
Q |
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| T |
15864948 |
gttgatgctcgtatttgcaggcttctgtgaattgatccatcttctgctgcttatcttgctgctgaatgtttaggttggagtattgattaatgaaaaaaat |
15864849 |
T |
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| Q |
210 |
tagctaattttgttgaaaattagttcttggtgtgtg |
245 |
Q |
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| T |
15864848 |
tagctaattttgttgaaaattagttcttggtgtgtg |
15864813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 157; Significance: 1e-83; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 18 - 235
Target Start/End: Original strand, 22799992 - 22800208
Alignment:
| Q |
18 |
agatgaagaaattatccgactctttatggaaaaacaaaaggatgtctctggatgattttctaggaaatacagaagcaagtataggtacggttgttgatgc |
117 |
Q |
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| T |
22799992 |
agatgaagaaattatccgactctttatggaaaaacaacaggatgtctcttgatgattttctaggaaatacagaagcaagtatatgtccggttgttgatgc |
22800091 |
T |
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| Q |
118 |
tcgtatttgcaggcttctgtgaattgatccatcttctgctgcttatcttgctgctgaatgtttaggttggagtattgattaatgnnnnnnnttagctaat |
217 |
Q |
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| T |
22800092 |
tcgtatttccaggcttctgtgaattgatccatcttctgctgc-catcttgctgctgaaggtttaggttggagtattgattaatgaaaaaaatgagctaat |
22800190 |
T |
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| Q |
218 |
tttgttgaaaattagttc |
235 |
Q |
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| T |
22800191 |
tttgttgaaaattagttc |
22800208 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 39 - 158
Target Start/End: Original strand, 22813059 - 22813178
Alignment:
| Q |
39 |
ctttatggaaaaacaaaaggatgtctctggatgattttctaggaaatacagaagcaagtataggtacggttgttgatgctcgtatttgcaggcttctgtg |
138 |
Q |
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| T |
22813059 |
ctttatggaaaaaccttaagatgtatttagatgatttcctagaaaatacagaagcaaatatatgtccagttatcgatgctcgtatttgcaggattctgta |
22813158 |
T |
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| Q |
139 |
aattgatccatcttctgctg |
158 |
Q |
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| T |
22813159 |
aatcgaaccatcttctgctg |
22813178 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 69 - 160
Target Start/End: Original strand, 22878745 - 22878836
Alignment:
| Q |
69 |
atgattttctaggaaatacagaagcaagtataggtacggttgttgatgctcgtatttgcaggcttctgtgaattgatccatcttctgctgct |
160 |
Q |
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| T |
22878745 |
atgatattctagaaaatacagaagcaaatatgtgtctggttatcgatgctcgtatttggaggattctgtaaattgatccatcttctgctgct |
22878836 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 68 - 160
Target Start/End: Original strand, 22896406 - 22896498
Alignment:
| Q |
68 |
gatgattttctaggaaatacagaagcaagtataggtacggttgttgatgctcgtatttgcaggcttctgtgaattgatccatcttctgctgct |
160 |
Q |
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| T |
22896406 |
gatgatattctagaaaatacagaagcaaatatatgtcttgttatcgatgctcgtatttggaggattctataaattgagccatcttctgctgct |
22896498 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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