View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_high_3 (Length: 459)
Name: NF8928_high_3
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_high_3 |
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Alignment Details
Target: chr8 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 17 - 435
Target Start/End: Original strand, 43863005 - 43863423
Alignment:
| Q |
17 |
tactattatatgtgagtcacttttaagtcattattacacttttcatttatgataatgttgaatatgaacctatactttttgaccaaatgaacataaatac |
116 |
Q |
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| T |
43863005 |
tactactatatgtgagtcacttgtaagtcattattacacttttcatttataataatgttgaatatgaacctatactttttgaccaaatgaacatatatac |
43863104 |
T |
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| Q |
117 |
acttgaaaacaataagttgataatactatctttccatttattttacttttaaatttgtgtgaagcaagcaaatgtgtagttattgactggaattgagttg |
216 |
Q |
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| T |
43863105 |
acttgaaaacaataagttgataatactatctttccatttattttacttttaaatttgtgtgaagcaagcaaatgtgtagttattgactggaattgagttg |
43863204 |
T |
|
| Q |
217 |
agtgtccaaaaaataccgattcggtcagggttcgtggcagtatatattttcttgttatcataaattagtggaaagatttatatgttaaaacacaatcgat |
316 |
Q |
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| T |
43863205 |
agtgtccaaaaaataccgattcggtctgggttcgtggcagtatatattttcttgttatcataaattagtggaaagatttatatgttaaaacacaatcgat |
43863304 |
T |
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| Q |
317 |
tttagataataaaattataatacaatgaaagcacaaagagaaagaaacaatattttctcatgaagggaacattattcactttcttatgattgaaaagtat |
416 |
Q |
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|||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
43863305 |
tttagataataaaattataataaaatgaaagcagaaagagaaagaaacaatattttctcatgaagggaacattattcactttcttatgattgaaaaatat |
43863404 |
T |
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| Q |
417 |
tttcaccaccaaagaatac |
435 |
Q |
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| T |
43863405 |
tttcaccaccaaagaatac |
43863423 |
T |
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