View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_1 (Length: 792)
Name: NF8928_low_1
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_1 |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 692; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 692; E-Value: 0
Query Start/End: Original strand, 16 - 792
Target Start/End: Complemental strand, 34435837 - 34435071
Alignment:
| Q |
16 |
agacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaa--gacgtaattaaaggcaaccacatatgtcggatccggattgt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||| |
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| T |
34435837 |
agacacacgcaccagacacaagctgacacataactactaataataattttgaaaaaatagacgtaattaaaggcaaccacatatgtcagatccggattgt |
34435738 |
T |
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| Q |
114 |
aaataggttgtccaatcaagatcagacagtctacattacaagctaagtattttagatctnnnnnnnccaaaatcctctttaaaatctggactgttctatc |
213 |
Q |
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| T |
34435737 |
aaataggttgtccaatcaagatcagacagtctagattacaagctaagtattttagatctaa-------aaaaacc-----aaaatctggactgttctatc |
34435650 |
T |
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| Q |
214 |
tttattgacagctgatatgcctgtgcagtcacactgcacccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
313 |
Q |
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| T |
34435649 |
tttattgacagctgatatgcctgtgcaatcacactgcaaccaatccaaatgtgtgagtgttaagacaccggcaaatgtcggacacaaaacatgtgttcca |
34435550 |
T |
|
| Q |
314 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagcta |
413 |
Q |
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| T |
34435549 |
tctgatgatggtgatgtattaatacattttttggcactaacttatataatccatatgattttataattccagccctatcatgatgagtgctggagagcta |
34435450 |
T |
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| Q |
414 |
gaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataagaaaagggaaaatgtgttgtctcttcataa |
513 |
Q |
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| T |
34435449 |
gaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataagaaaagggaaaatgtgttgtctcttcataa |
34435350 |
T |
|
| Q |
514 |
acgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatgcaacacttatgaacattgctgataaccc |
613 |
Q |
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| T |
34435349 |
acgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaatgcaacacttatgaacattgctgataaccc |
34435250 |
T |
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| Q |
614 |
aacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattgttactggtaatgatttttcaacattgtatgctcctctt |
713 |
Q |
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| T |
34435249 |
aacaaatgttcaacttcctggtatgtataacaaagaagagaatgcacgtgtgcctatcattgttactggtaatgatttttcaacattgtatgctcctctt |
34435150 |
T |
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| Q |
714 |
attcgtgacggtcgtatggagaaattctattgggcacctacaagagaagatcgtattggtgtttgtaaagggattttta |
792 |
Q |
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| T |
34435149 |
attcgtgacggtcgtatggagaaattctattgggcacctacaagagaagatcgtattggtgtttgtaaagggattttta |
34435071 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 177; Significance: 5e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 5e-95
Query Start/End: Original strand, 383 - 775
Target Start/End: Complemental strand, 30666118 - 30665726
Alignment:
| Q |
383 |
cagccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataata |
482 |
Q |
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|||||| ||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| || |||| |||||| | ||||| | ||||| || |
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| T |
30666118 |
cagccccatcatgatgagtgctggagagcttgaaagtggaaatgcaggagagccagcaaaactgatcagacagagataccgtgaagccgctgacattatc |
30666019 |
T |
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| Q |
483 |
agaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaa |
582 |
Q |
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| T |
30666018 |
aggaagggaaagatgtgttgtctgttcatcaacgatctcgatgcaggagcaggtcgtatgggtggaaccacacaatacactgtcaacaaccagatggtga |
30665919 |
T |
|
| Q |
583 |
atgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattgttactgg |
682 |
Q |
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| T |
30665918 |
atgccacactcatgaacattgctgataaccccaccaatgtccaactccctggtatgtacaacaaggaagataacgctcgtgtgcccatcattgtcaccgg |
30665819 |
T |
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| Q |
683 |
taatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctacaagagaagatcgtattggtgt |
775 |
Q |
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| T |
30665818 |
taacgatttctcaacactttatgctcctctcatccgtgatggtcgtatggagaaattctactgggctcctacaagagaagaccgtattggtgt |
30665726 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 135; Significance: 6e-70; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 135; E-Value: 6e-70
Query Start/End: Original strand, 384 - 754
Target Start/End: Complemental strand, 6853850 - 6853480
Alignment:
| Q |
384 |
agccctatcatgatgagtgctggagagctagaaagtggaaatgcgggagaaccagcaaaactaattcgacaaagatacagagaagcatcagacataataa |
483 |
Q |
| |
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|||||||| ||||||||||| ||||| | |||||||||||||| ||||| || ||||| | ||| | ||||| ||| | || || || ||||| || | |
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| T |
6853850 |
agccctataatgatgagtgccggagaattggaaagtggaaatgcaggagagcctgcaaagttgattaggcaaaggtaccgtgaggcgtccgacattatca |
6853751 |
T |
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| Q |
484 |
gaaaagggaaaatgtgttgtctcttcataaacgatcttgatgcaggagccggtcgtatgggtggaacaacacagtacacagtgaacaatcaaatggtaaa |
583 |
Q |
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||||||| || ||||| ||||||||||| || ||||||||||||||||| ||| | |||||||| || || || |||||||| ||||| || |||||||| |
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| T |
6853750 |
gaaaaggaaagatgtgctgtctcttcatcaatgatcttgatgcaggagctggtagaatgggtggcactactcaatacacagtcaacaaccagatggtaaa |
6853651 |
T |
|
| Q |
584 |
tgcaacacttatgaacattgctgataacccaacaaatgttcaacttcctggtatgtataacaaagaagagaatgcgcgtgtgcctatcattgttactggt |
683 |
Q |
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|||||| || |||||||||||||| ||||| || |||||||||||||| |||||||| ||||||||||||||||| || || |||||||| || ||||| |
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| T |
6853650 |
tgcaaccctcatgaacattgctgacaaccctaccaatgttcaacttcccggtatgtacaacaaagaagagaatgcccgcgtccctatcatcgtcactggc |
6853551 |
T |
|
| Q |
684 |
aatgatttttcaacattgtatgctcctcttattcgtgacggtcgtatggagaaattctattgggcacctac |
754 |
Q |
| |
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||||| || || || |||||||||||| | |||||||| || |||||||| |||||||| ||||||||||| |
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| T |
6853550 |
aatgacttctctacgttgtatgctcctttaattcgtgatggacgtatggaaaaattctactgggcacctac |
6853480 |
T |
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