View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_13 (Length: 458)
Name: NF8928_low_13
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_13 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 414; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 14 - 458
Target Start/End: Original strand, 37309423 - 37309870
Alignment:
| Q |
14 |
catcattgattgcagtctctcaaatttctgttttgtttcggtccacgaggctcccttttccacaattggaatccaaacaagttcatattggctttctaac |
113 |
Q |
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| T |
37309423 |
catcattgattgcagtctctcaaatttctgttttgtttcggtccacggggctcccttttccacaatcggaatccaaacaagttcatattggctttctaac |
37309522 |
T |
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| Q |
114 |
cttgttgaatcttggcgcgattcttgatacatttgttcaaaaatcacaacctcttgatcagatatatggtggaggtctgttatgtagagcaacacaattt |
213 |
Q |
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| T |
37309523 |
cttgttgaatcttggcgcgattcttgatacatttgttcaaaaatcacaacctcttgatcagatatatggtggaggtctgttatgtagagcaacacaattt |
37309622 |
T |
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| Q |
214 |
tctttctcaacacctcaatgctaacctgaaggcagaaaaatgaattaaatgattatgaattattgttgtaagattgcattgccgttattcttagcaagtt |
313 |
Q |
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| T |
37309623 |
tctttctcaacacctcaatgctaacctgaaggcagaaaaatgaattaaatgattatgaattattgttgtaagattgcattgctgttattcttagcaagtt |
37309722 |
T |
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| Q |
314 |
ttgattaaagatcatgctgatgtcaatagaatatagattcatatatattgtgtgtgaaacgaagaaacagcaga---ttctatgctaaccctttgcttgg |
410 |
Q |
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| T |
37309723 |
ttgattaaagatcatgctgatgtcaatagaatatagattcatatatattgtgtgtgaaacgaagaaacaacagattcttctatgctaaccctttgcttgg |
37309822 |
T |
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| Q |
411 |
tagaaccatcaaacaatggcaacggatcatccttgcagcgaatcaaag |
458 |
Q |
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| T |
37309823 |
tagaaccatcagacaatggcaacggatcatccttgcagcgaatcaaag |
37309870 |
T |
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