View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_16 (Length: 453)
Name: NF8928_low_16
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 191; Significance: 1e-103; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 191; E-Value: 1e-103
Query Start/End: Original strand, 248 - 438
Target Start/End: Original strand, 4575774 - 4575964
Alignment:
| Q |
248 |
gtcgtcatcaactcgagaggaagaaaccgctgtgtgatgtggttccgatcacatggcttcttcttctcctcctcctccgtcacaatcttattcttctgca |
347 |
Q |
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| T |
4575774 |
gtcgtcatcaactcgagaggaagaaaccgctgtgtgatgtggttccgatcacatggcttcttcttctcctcctcctccgtcacaatcttattcttctgca |
4575873 |
T |
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| Q |
348 |
actccttcctatcaattcatcactcatcttcccattgctccttcttctcccagtgcgtttctcgattcgattcaccatttccgatttattt |
438 |
Q |
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| T |
4575874 |
actccttcctatcaattcatcactcatcttcccattgctccttcttctcccagtgcgtttctcgattcgattcaccatttccgatttattt |
4575964 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 124; E-Value: 1e-63
Query Start/End: Original strand, 19 - 217
Target Start/End: Original strand, 4575550 - 4575743
Alignment:
| Q |
19 |
gtggagtcagggatctttttcaaacaattataggatgtttttcaacgttttttaaaataaaaactgatccaaattatataggggcgaaaatcatatttaa |
118 |
Q |
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| T |
4575550 |
gtggggtcagggacctttttcaaacaattataagatatttttcaacgttttt-aaaatcaaaactgatccaaattgta-aggag-gaaaatcatatttaa |
4575646 |
T |
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| Q |
119 |
gcgatgccaaaatcgagagaagattattgtcaaagagttgaatattctcaactgagaaaatgggttaaaagcactttaatacatcaattcgttagatat |
217 |
Q |
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| T |
4575647 |
actatgtcaaaatcgagagaagattattgtca--gagttgaatattctcaactgagaaaatgggttaaaagcactttaatacatcaattcgttagatat |
4575743 |
T |
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