View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8928_low_17 (Length: 396)

Name: NF8928_low_17
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8928_low_17
NF8928_low_17
[»] chr2 (1 HSPs)
chr2 (16-379)||(38743811-38744178)
[»] scaffold0009 (1 HSPs)
scaffold0009 (311-372)||(27225-27286)
[»] chr7 (4 HSPs)
chr7 (311-372)||(29059885-29059946)
chr7 (311-371)||(20207578-20207638)
chr7 (311-372)||(31492183-31492244)
chr7 (311-372)||(19477250-19477310)
[»] chr8 (3 HSPs)
chr8 (311-372)||(4125024-4125085)
chr8 (311-372)||(7839253-7839314)
chr8 (311-372)||(19715725-19715787)
[»] chr6 (2 HSPs)
chr6 (311-372)||(12836897-12836958)
chr6 (309-378)||(9536841-9536910)
[»] chr5 (2 HSPs)
chr5 (311-372)||(5123498-5123559)
chr5 (311-372)||(31113414-31113475)
[»] chr4 (4 HSPs)
chr4 (311-372)||(9012350-9012411)
chr4 (311-372)||(31307066-31307127)
chr4 (311-372)||(33529337-33529398)
chr4 (311-372)||(38766169-38766230)
[»] chr3 (4 HSPs)
chr3 (313-370)||(38331210-38331267)
chr3 (313-371)||(25224780-25224838)
chr3 (311-372)||(40294692-40294753)
chr3 (311-372)||(55123177-55123238)
[»] chr1 (1 HSPs)
chr1 (311-348)||(42297442-42297479)


Alignment Details
Target: chr2 (Bit Score: 253; Significance: 1e-140; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 253; E-Value: 1e-140
Query Start/End: Original strand, 16 - 379
Target Start/End: Complemental strand, 38744178 - 38743811
Alignment:
Q  16 acaagtttcatgcacacgtgaattatggaaagtttgttaagaattttttactnnnnnnntttctaacacctgtgttattatggtataactggaaacttgg 115  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||    
T  38744178 acaagtttcatgcacacgtgaattatggaaagtttgttaagaattttttactaaaaaa-tttctaacacctgtgttattatggtataactggaaacttgg 38744080  T
Q  116 tactatgatgtcattatgagnnnnnnnnnnnn--gtagtgatggtgtcactgtgatttgttgtaatgatatattacttcataaaatggcgccactaatct 213  Q
    ||||||||||||||||||||              ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  38744079 tactatgatgtcattatgagtttttttttttttggtagtgatggtgtcactatgatttgttgtaatgatatattacttcataaaatggcgccactaatct 38743980  T
Q  214 atttttagtgatttgatgagccaacaaaagttgatgtccatttttataaaaaggatcaaagagaatac-at--tgtgtgtacaccaagtatcctatatga 310  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||  |||||||||||||||||||||  | ||    
T  38743979 atttttagtgatttgatgagccaacaaaagttgatgtccatttttataaaaaggatcaaagagagtactattgtgtgtgtacaccaagtatcctccacga 38743880  T
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccccaaaagt 379  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  38743879 gcgcaactgcggagactaatccctaaagcattgtgagatccaaatgagcggcaagctctccccaaaagt 38743811  T

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Target: scaffold0009 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 27225 - 27286
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||| ||||||||||||  ||||| |||||||| ||||| |||||||||||||||    
T  27225 gcgcaactgcgaagactaatccctcgagcatcgtgagatccaaatgggcggcaagctctccc 27286  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 29059946 - 29059885
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    |||||||||||||||||||||||| |||||||||| || | ||||| |||||| ||||||||    
T  29059946 gcgcaactgcggagactaatccctcaagcattgtgggacccaaatgggcggcaggctctccc 29059885  T

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Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 311 - 371
Target Start/End: Complemental strand, 20207638 - 20207578
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 371  Q
    ||||||||||||||||||||||||  ||||||||  |||| ||||| ||||||||||||||    
T  20207638 gcgcaactgcggagactaatccctcgagcattgtaggatccaaatgcgcggcaagctctcc 20207578  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 31492244 - 31492183
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31492244 gcgcaactgcggagactaatccctcgagcattgtgggacctaaatgggcggcaggctctccc 31492183  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 19477250 - 19477310
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | |||||  ||||||||||||||    
T  19477250 gcgcaactgcggagactaatccct-cagcattgtgggacccaaatggccggcaagctctccc 19477310  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000006; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 4125024 - 4125085
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  4125024 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 4125085  T

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Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 7839253 - 7839314
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  7839253 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcatgctctccc 7839314  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 19715725 - 19715787
Alignment:
Q  311 gcgcaactgcggagactaat-ccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    |||||||||||||||||||| ||||  ||||||||| || | ||||| |||||||||||||||    
T  19715725 gcgcaactgcggagactaatcccctcgagcattgtgggacccaaatgggcggcaagctctccc 19715787  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 12836897 - 12836958
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||| |||||||||||||| |||||||||| || | ||||| ||||| |||||||||    
T  12836897 gcgcaactggggagactaatccctcaagcattgtgggacccaaatgggcggcgagctctccc 12836958  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 309 - 378
Target Start/End: Complemental strand, 9536910 - 9536841
Alignment:
Q  309 gagcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccccaaaag 378  Q
    ||||||||||||||||||||||||||  |||||||||  ||| |||||  ||| | |||||||| |||||    
T  9536910 gagcgcaactgcggagactaatccctcgagcattgtggaatctaaatggacggtaggctctccctaaaag 9536841  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 5123498 - 5123559
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  5123498 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 5123559  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 31113475 - 31113414
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  || |||||| |||| ||||| |||| | ||||||||    
T  31113475 gcgcaactgcggagactaatccctcgagtattgtgggatccaaatgggcggtaggctctccc 31113414  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 9012411 - 9012350
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | || || |||||||||||||||    
T  9012411 gcgcaactgcggagactaatccctcgagcattgtgggacccaagtgggcggcaagctctccc 9012350  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Original strand, 31307066 - 31307127
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  ||||||||| || | ||||| |||||| ||||||||    
T  31307066 gcgcaactgcggagactaatccctcgagcattgtgggacccaaatgggcggcaggctctccc 31307127  T

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Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 33529398 - 33529337
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  || |||||| || | ||||| |||||||||||||||    
T  33529398 gcgcaactgcggagactaatccctccagtattgtgggacccaaatgggcggcaagctctccc 33529337  T

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Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 38766230 - 38766169
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||||||||||||||||  |||||||||||| | ||||| ||||||  |||||||    
T  38766230 gcgcaactgcggagactaatccctcgagcattgtgagacccaaatgggcggcagactctccc 38766169  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 313 - 370
Target Start/End: Complemental strand, 38331267 - 38331210
Alignment:
Q  313 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctc 370  Q
    |||||||||||||||||||||| || ||||||| || | ||||| |||||||||||||    
T  38331267 gcaactgcggagactaatccctcaaacattgtgggacccaaatgggcggcaagctctc 38331210  T

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Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 313 - 371
Target Start/End: Complemental strand, 25224838 - 25224780
Alignment:
Q  313 gcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctcc 371  Q
    ||||||||||||||||||||||  ||||||||| || | ||||| |||||||| |||||    
T  25224838 gcaactgcggagactaatcccttgagcattgtgggacctaaatgggcggcaagttctcc 25224780  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 40294753 - 40294692
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    |||||||||||||||||||||| |  || |||||| |||  |||||||||||||||| ||||    
T  40294753 gcgcaactgcggagactaatccttcgagtattgtgggattcaaatgagcggcaagctttccc 40294692  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 372
Target Start/End: Complemental strand, 55123238 - 55123177
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgagatcaaaatgagcggcaagctctccc 372  Q
    ||||||||||| ||||||||||||  |||||||||||| | ||||| |  ||||||||||||    
T  55123238 gcgcaactgcgaagactaatccctcgagcattgtgagacccaaatgggtagcaagctctccc 55123177  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 311 - 348
Target Start/End: Original strand, 42297442 - 42297479
Alignment:
Q  311 gcgcaactgcggagactaatccctaaagcattgtgaga 348  Q
    ||||||||||||||||||||||||  ||||||||||||    
T  42297442 gcgcaactgcggagactaatccctcgagcattgtgaga 42297479  T

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