View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8928_low_2 (Length: 730)

Name: NF8928_low_2
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8928_low_2
NF8928_low_2
[»] chr4 (14 HSPs)
chr4 (101-444)||(23426437-23426785)
chr4 (507-715)||(23427346-23427552)
chr4 (14-94)||(23425867-23425947)
chr4 (519-604)||(51084219-51084304)
chr4 (524-632)||(33881280-33881388)
chr4 (524-631)||(40712073-40712180)
chr4 (523-606)||(52255715-52255798)
chr4 (525-605)||(5382607-5382686)
chr4 (517-604)||(53995743-53995830)
chr4 (523-598)||(54234141-54234214)
chr4 (517-606)||(7290684-7290773)
chr4 (528-597)||(21680004-21680073)
chr4 (517-604)||(1180584-1180674)
chr4 (517-604)||(1458311-1458398)
[»] chr6 (5 HSPs)
chr6 (523-632)||(17313861-17313970)
chr6 (523-604)||(692831-692913)
chr6 (523-607)||(15973431-15973515)
chr6 (559-637)||(6139167-6139245)
chr6 (565-602)||(14265422-14265459)
[»] chr1 (10 HSPs)
chr1 (523-606)||(13142371-13142454)
chr1 (517-608)||(43403422-43403513)
chr1 (519-637)||(40708315-40708433)
chr1 (519-603)||(22680655-22680739)
chr1 (523-598)||(2753478-2753553)
chr1 (524-606)||(33710972-33711054)
chr1 (515-594)||(13103548-13103627)
chr1 (519-574)||(49831793-49831848)
chr1 (517-603)||(42069818-42069903)
chr1 (527-580)||(51505008-51505061)
[»] chr5 (6 HSPs)
chr5 (523-605)||(5863407-5863489)
chr5 (523-637)||(40897525-40897639)
chr5 (517-603)||(28283222-28283308)
chr5 (525-632)||(1670097-1670203)
chr5 (524-606)||(10541463-10541545)
chr5 (547-605)||(13542594-13542652)
[»] chr8 (8 HSPs)
chr8 (523-632)||(14266459-14266568)
chr8 (522-606)||(22746230-22746315)
chr8 (517-604)||(42279844-42279931)
chr8 (523-606)||(29442457-29442540)
chr8 (517-637)||(25887655-25887775)
chr8 (519-598)||(10582957-10583036)
chr8 (567-604)||(27209057-27209094)
chr8 (518-603)||(27418592-27418676)
[»] chr7 (5 HSPs)
chr7 (517-595)||(21857754-21857832)
chr7 (523-606)||(5515649-5515732)
chr7 (517-579)||(9822371-9822433)
chr7 (517-579)||(10724296-10724358)
chr7 (559-632)||(3526171-3526244)
[»] scaffold0004 (1 HSPs)
scaffold0004 (519-604)||(33736-33821)
[»] chr3 (10 HSPs)
chr3 (508-583)||(8710947-8711022)
chr3 (508-583)||(9062834-9062909)
chr3 (517-603)||(50496185-50496272)
chr3 (559-632)||(9797935-9798008)
chr3 (524-598)||(43347002-43347076)
chr3 (517-604)||(44027775-44027862)
chr3 (520-603)||(4958028-4958111)
chr3 (559-598)||(50385613-50385652)
chr3 (555-604)||(11589695-11589744)
chr3 (517-598)||(43106221-43106302)
[»] chr2 (11 HSPs)
chr2 (507-604)||(5305423-5305520)
chr2 (523-637)||(30378896-30379010)
chr2 (507-604)||(12068504-12068600)
chr2 (545-604)||(30617105-30617164)
chr2 (531-632)||(12016331-12016432)
chr2 (517-633)||(38119468-38119584)
chr2 (519-598)||(15609424-15609503)
chr2 (523-598)||(30375732-30375807)
chr2 (522-604)||(38855656-38855738)
chr2 (517-598)||(42472532-42472613)
chr2 (545-598)||(19284793-19284846)
[»] scaffold1944 (1 HSPs)
scaffold1944 (523-637)||(791-905)
[»] scaffold1790 (1 HSPs)
scaffold1790 (523-637)||(932-1046)


Alignment Details
Target: chr4 (Bit Score: 295; Significance: 1e-165; HSPs: 14)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 295; E-Value: 1e-165
Query Start/End: Original strand, 101 - 444
Target Start/End: Original strand, 23426437 - 23426785
Alignment:
Q  101 tcatctggtacgaatttaagaaaataaagcaagatcaacaacccatattgaaataaacgtctaatatatgagcatttaacagaacaa------aatcaat 194  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||      |||||||    
T  23426437 tcatcttgtacgaatttaagaaaataaagcaagatcaacaacccatattgaaagaaacgtctaatatatgagcatttaacagaacaactgcaaaatcaat 23426536  T
Q  195 caaccgtatggcattaacacaagacatagagattgatcaactaaagttgaaatgtttaatctccatcgagtataattaatacaaaaaatcatgagaagac 294  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23426537 caaccgtatggcattaacacaagacatagagattgatcaactaaagttgaaatgtttaatctccatcgagtataattaatacaaaaaatcatgagaagac 23426636  T
Q  295 aactttcacatgtccctttggtgtgtttagttataggagaattcccttcaacatgggtaataatcctacaactttcgagagatgtatgcaagtaatcttc 394  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||    
T  23426637 aactttcacatgtccctttggtgtgtttagttataggagaattcccttcaacaagggtaataatcctaaaactttcgagagatgtatgcaagtaatcttc 23426736  T
Q  395 aaaaatttaattgaaaaatgaatctagaatgtcatggatgatttctcagt 444  Q
    ||||||||| || ||||||||||||||||| |||||||||||||||||||    
T  23426737 aaaaatttagtt-aaaaatgaatctagaatttcatggatgatttctcagt 23426785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 166; E-Value: 2e-88
Query Start/End: Original strand, 507 - 715
Target Start/End: Original strand, 23427346 - 23427552
Alignment:
Q  507 aaaaggcaaagtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||| ||| |||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  23427346 aaaaggcaaagtgaggtttaaaataaagcctttgacatgctaatagatcagacttagactttagttttttcaactaggcctgacctatttaaacaaagtc 23427445  T
Q  607 tgtcttggtccggcctattcccacccttaatactcataaaccagtcaatgtacaccatacaaacattttagaagtcatatactcatataaccgattcaac 706  Q
     ||||||| |||||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||    
T  23427446 cgtcttggcccggccaattctcacccttaatactcataaaccagtcaatgtacaccatacaaacattttagaagtcatatactc--ataaccgattcaac 23427543  T
Q  707 cattttaat 715  Q
    |||||||||    
T  23427544 cattttaat 23427552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 1e-37
Query Start/End: Original strand, 14 - 94
Target Start/End: Original strand, 23425867 - 23425947
Alignment:
Q  14 agaacacaacaatatatataaatcatcatctcgtacaaagatcttcaataaatcaagatcgacaattgaagaaacataaca 94  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23425867 agaacacaacaatatatataaatcatcatctcgtacaaagatcttcaataaatcaagatcgacaattgaagaaacataaca 23425947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 66; E-Value: 9e-29
Query Start/End: Original strand, 519 - 604
Target Start/End: Complemental strand, 51084304 - 51084219
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||| | ||||||||| |||||    
T  51084304 caggcttaaaataaagcctttgacatgctaatagcccaggcttaggctttagttttttcaactaggcccggcctatttaagcaaag 51084219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 524 - 632
Target Start/End: Original strand, 33881280 - 33881388
Alignment:
Q  524 ttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggccta 623  Q
    ||||||||||||||||||||  ||||||  |||||||||| ||||||||||||||||||||||||||||||||||  |||||| | ||  | ||| ||||    
T  33881280 ttaaaataaagcctttgacagactaatatgccagacttagcctttagttttttcaactaggcctgacctatttaaggaaagtccggctcagcccgaccta 33881379  T
Q  624 ttcccaccc 632  Q
    |||||||||    
T  33881380 ttcccaccc 33881388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 524 - 631
Target Start/End: Original strand, 40712073 - 40712180
Alignment:
Q  524 ttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggccta 623  Q
    ||||||||||| ||| ||||||||| |||  |||||||||||||||||| ||| ||||||| |||||||||||||||||||| || || || ||||| ||    
T  40712073 ttaaaataaagtcttggacatgctagtaggtcagacttaggctttagttgtttaaactaggtctgacctatttaaacaaagtttgactcggaccggctta 40712172  T
Q  624 ttcccacc 631  Q
    || |||||    
T  40712173 tttccacc 40712180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 523 - 606
Target Start/End: Original strand, 52255715 - 52255798
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctga-cctatttaaacaaagtc 606  Q
    |||||||||||||||||||||  ||||||| ||||||||| ||||||||||||||||||| |||| | |||||||||||||||||    
T  52255715 cttaaaataaagcctttgacagactaataggccagacttaagctttagttttttcaacta-gcctcagcctatttaaacaaagtc 52255798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 525 - 605
Target Start/End: Original strand, 5382607 - 5382686
Alignment:
Q  525 taaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagt 605  Q
    |||||||||||||| |||| |||||||| |||| |||| ||||||| ||||||||||||||||| ||||||||| ||||||    
T  5382607 taaaataaagccttcgacacgctaataggccaggcttaagctttag-tttttcaactaggcctggcctatttaagcaaagt 5382686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 517 - 604
Target Start/End: Original strand, 53995743 - 53995830
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacc-agacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||||||||||||||||||||||| | ||| || || || ||||||| |||||||||||||||||||||  ||||||||| |||||    
T  53995743 gtcaggcttaaaataaagcctttgacaag-taaaaggcctaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 53995830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 523 - 598
Target Start/End: Complemental strand, 54234214 - 54234141
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||||||||||||||||||||||||||| |  ||| ||||  ||  ||||||||||||||||||||||||||||||    
T  54234214 cttaaaataaagcctttgacatgctaatggggcaggcttatact--agttttttcaactaggcctgacctatttaa 54234141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 606
Target Start/End: Complemental strand, 7290773 - 7290684
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||||||||| |||||||| | ||| |||||| | ||||||||||||||||||||||||  |||  ||||||||| |||||||    
T  7290773 gtcaggcttaaaataaagtctttgaca-gataaaagaccaaggcttaggctttagttttttcaactaaacctagcctatttaaccaaagtc 7290684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 528 - 597
Target Start/End: Complemental strand, 21680073 - 21680004
Alignment:
Q  528 aataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctattta 597  Q
    |||||| ||||| ||||||||||||  ||||||||||||||| ||||||||||||||  | |||||||||    
T  21680073 aataaaacctttaacatgctaataggtcagacttaggctttaattttttcaactaggtttaacctattta 21680004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 604
Target Start/End: Original strand, 1180584 - 1180674
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagac---ttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||| ||||||||||||||||||||| |||||||| |||| |   |||| ||| |||||||||||||| ||  ||||||||||| |||||    
T  1180584 gtcagacttaaaataaagcctttgacaggctaataggccaggcttattagacttcagttttttcaactatgctcgacctatttaagcaaag 1180674  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 604
Target Start/End: Complemental strand, 1458398 - 1458311
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    |||||||||||||||||  |||||||| | ||| || ||| ||||||||| |||||||||||||| || ||| |||||||||| |||||    
T  1458398 gtcaggcttaaaataaaatctttgacagg-taaaaggccaagacttaggccttagttttttcaacaagacctaacctatttaagcaaag 1458311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 58; Significance: 5e-24; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 523 - 632
Target Start/End: Complemental strand, 17313970 - 17313861
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||| ||||||||| ||||||||  |||||||| |||||||||||||||||||||||| |||||||||| |||| || | ||||   ||||||    
T  17313970 cttaaaataaaacctttgacaagctaataggtcagacttacgctttagttttttcaactaggcctaacctatttaagcaaaatccgacttgactcggcct 17313871  T
Q  623 attcccaccc 632  Q
    ||||||||||    
T  17313870 attcccaccc 17313861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 604
Target Start/End: Complemental strand, 692913 - 692831
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||||||| ||||||||||| ||| || ||| ||||||||  |||||||||||||||||||||  ||||||||| |||||    
T  692913 cttaaaataaatcctttgacatggtaaaaggccaagacttaggtcttagttttttcaactaggcctagcctatttaagcaaag 692831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 523 - 607
Target Start/End: Complemental strand, 15973515 - 15973431
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtct 607  Q
    |||||||||||| ||||| |  | ||||||  |||| ||||| |||| |||||||||||||| | ||||||||||||||||||||    
T  15973515 cttaaaataaagtctttggctggttaataggtcagagttaggatttaattttttcaactaggtcggacctatttaaacaaagtct 15973431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 559 - 637
Target Start/End: Original strand, 6139167 - 6139245
Alignment:
Q  559 cttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcctattcccacccttaat 637  Q
    ||||||| ||||||||||||| |||| | | ||||||||| ||||||| | || || |||||  |||||||||||||||    
T  6139167 cttaggccttagttttttcaattaggtcaggcctatttaagcaaagtcagactcggcccggctcattcccacccttaat 6139245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 565 - 602
Target Start/End: Complemental strand, 14265459 - 14265422
Alignment:
Q  565 ctttagttttttcaactaggcctgacctatttaaacaa 602  Q
    |||||||||||| ||||||| |||||||||||||||||    
T  14265459 ctttagtttttttaactaggtctgacctatttaaacaa 14265422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 8e-23; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 523 - 606
Target Start/End: Complemental strand, 13142454 - 13142371
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||||| |||| | |||||||| |||| ||||||||||| |||||||||||||||||||||||||||| |||||||    
T  13142454 cttaaaataaagccattgataggctaataggccaggcttaggctttaattttttcaactaggcctgacctatttaagcaaagtc 13142371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 517 - 608
Target Start/End: Original strand, 43403422 - 43403513
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctg 608  Q
    ||||| |||||||||||| |||||||||||||||||  |||||||| |||||| |||||||||||||| ||||| ||||||| |||||||||    
T  43403422 gtcagacttaaaataaagtctttgacatgctaataggtcagacttatgctttaattttttcaactaggtctgacttatttaagcaaagtctg 43403513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 519 - 637
Target Start/End: Original strand, 40708315 - 40708433
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtcc 617  Q
    ||||||||||||||||||||||||| | ||| || ||| | |||||||||||||||||||||||||||||  ||||||||| ||||||| | || || ||    
T  40708315 caggcttaaaataaagcctttgacagg-taaaaggccaaggcttaggctttagttttttcaactaggcctagcctatttaaccaaagtccgactcggccc 40708413  T
Q  618 ggcctattcccacccttaat 637  Q
    |||  |||||||||| ||||    
T  40708414 ggctcattcccacccctaat 40708433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 519 - 603
Target Start/End: Complemental strand, 22680739 - 22680655
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaa 603  Q
    |||||||||| |||||||||||||| |||||||| |||||||||| |||| |||||||| |||||| ||  ||||||||| ||||    
T  22680739 caggcttaaagtaaagcctttgacaggctaataggccagacttagactttggttttttcgactaggtctagcctatttaagcaaa 22680655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 523 - 598
Target Start/End: Original strand, 2753478 - 2753553
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||||| |||||||||||| | ||||||||  |||  ||||||||||||||||||||||||||||||| |||||||    
T  2753478 cttaaagtaaagcctttgagaggctaataggtcaggtttaggctttagttttttcaactaggcctgacatatttaa 2753553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 524 - 606
Target Start/End: Original strand, 33710972 - 33711054
Alignment:
Q  524 ttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||||| | |||||||||||  ||| | |||||||||| |||||||||| || ||| ||||||||||||||||||    
T  33710972 ttaaaataaagcctataacatgctaataagccatagttaggctttaattttttcaaccagacctaacctatttaaacaaagtc 33711054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 515 - 594
Target Start/End: Original strand, 13103548 - 13103627
Alignment:
Q  515 aagtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctat 594  Q
    |||||| ||||||| |||||  ||||| | |||||||| ||||||||| |||||| |||||| ||||||||||| |||||    
T  13103548 aagtcaagcttaaactaaagtatttgataggctaataggccagacttaagctttaattttttaaactaggcctggcctat 13103627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 519 - 574
Target Start/End: Complemental strand, 49831848 - 49831793
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagtttt 574  Q
    |||||||||| ||||| |||||||| |||||||| |||| ||||||||||||||||    
T  49831848 caggcttaaagtaaagtctttgacaggctaataggccaggcttaggctttagtttt 49831793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 603
Target Start/End: Original strand, 42069818 - 42069903
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaa 603  Q
    ||||| |||||||||| | |||| |||||||||||   ||||||||| ||||||||||||||||||  |||||  ||||||| ||||    
T  42069818 gtcagacttaaaataa-gtctttaacatgctaatatgtcagacttagactttagttttttcaactaaacctgatttatttaagcaaa 42069903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 527 - 580
Target Start/End: Original strand, 51505008 - 51505061
Alignment:
Q  527 aaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaac 580  Q
    |||||||||||||||||  | ||||| |||||||||  ||||||||||||||||    
T  51505008 aaataaagcctttgacaaaccaataggccagacttatactttagttttttcaac 51505061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 55; Significance: 3e-22; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 523 - 605
Target Start/End: Original strand, 5863407 - 5863489
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagt 605  Q
    |||||||||||| |||||||| ||||||||| ||  ||||||||||| |||||||||||||||||||||||||||| ||||||    
T  5863407 cttaaaataaagtctttgacaagctaatagatcaagcttaggctttatttttttcaactaggcctgacctatttaagcaaagt 5863489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 523 - 637
Target Start/End: Original strand, 40897525 - 40897639
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||||||||||||| || || || | || |||||||||||||||||||||| ||||||  ||||||||| ||||| | | || || |||||      
T  40897525 cttaaaataaagcctttgacaggcaaaaagccaaggcttaggctttagttttttcaacaaggcctagcctatttaagcaaagcccgactcggcccggctc 40897624  T
Q  623 attcccacccttaat 637  Q
    |||||||||| ||||    
T  40897625 attcccacccctaat 40897639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 517 - 603
Target Start/End: Complemental strand, 28283308 - 28283222
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaa 603  Q
    ||||| ||||||||||| ||||||||| | ||||||||||||||||  |||||| ||||| ||||||||  | ||||||||| ||||    
T  28283308 gtcagacttaaaataaaacctttgacaggttaatagaccagacttaaactttagcttttttaactaggctcggcctatttaagcaaa 28283222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 525 - 632
Target Start/End: Original strand, 1670097 - 1670203
Alignment:
Q  525 taaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcctat 624  Q
    |||||||||  ||||||||  | |||||  ||| |||||||||| ||||||||||||| | |||||||||||||| |||||| | || || |||||||||    
T  1670097 taaaataaaatctttgacaaacaaataggtcaggcttaggctttggttttttcaactaagtctgacctatttaaaaaaagtccggctcgg-ccggcctat 1670195  T
Q  625 tcccaccc 632  Q
     |||||||    
T  1670196 acccaccc 1670203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 524 - 606
Target Start/End: Complemental strand, 10541545 - 10541463
Alignment:
Q  524 ttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||||||||||| |  ||  | | || ||||||| |||||||||||||||||||||  ||||||||| |||||||    
T  10541545 ttaaaataaagcctttgacaagtaaaaggtcaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaagtc 10541463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 547 - 605
Target Start/End: Complemental strand, 13542652 - 13542594
Alignment:
Q  547 taatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagt 605  Q
    ||||||| || ||||| |||||| ||||||||||||||  |||||||||||| ||||||    
T  13542652 taatagatcaaacttatgctttaattttttcaactaggtttgacctatttaagcaaagt 13542594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 54; Significance: 1e-21; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 523 - 632
Target Start/End: Original strand, 14266459 - 14266568
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||||||||||||| ||||| ||   || ||||| ||||| |||||||||||||||||||||||||||| ||||| |   || ||||||||||    
T  14266459 cttaaaataaagcctttgacaggctaagaggtgaggcttagactttaattttttcaactaggcctgacctatttaagcaaagcccagctcggtccggcct 14266558  T
Q  623 attcccaccc 632  Q
    ||||||||||    
T  14266559 attcccaccc 14266568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 522 - 606
Target Start/End: Complemental strand, 22746315 - 22746230
Alignment:
Q  522 gcttaaaataaagcctttgacatgctaatagaccagacttaggctttag-ttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    ||||||||||||||||||| | ||||||||| ||| ||||||| ||||  ||||||||||||| |||||||||||||| |||||||    
T  22746315 gcttaaaataaagcctttggcctgctaataggccacacttagggtttaaattttttcaactagacctgacctatttaagcaaagtc 22746230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 604
Target Start/End: Complemental strand, 42279931 - 42279844
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||||| ||| ||||||||||||| |||||||| |||| |||| | ||||||||||||||||||||  | ||||||||| |||||    
T  42279931 gtcaggctttaaaaaaagcctttgacaagctaataggccaggcttaagttttagttttttcaactaggctcggcctatttaagcaaag 42279844  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 606
Target Start/End: Complemental strand, 29442540 - 29442457
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    |||||||||||||||||||||||  ||  | | || |||| || ||||||||||||||||||||| |||||||||| |||||||    
T  29442540 cttaaaataaagcctttgacatgtaaaaggtcaaggcttaagccttagttttttcaactaggcctaacctatttaagcaaagtc 29442457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 517 - 637
Target Start/End: Complemental strand, 25887775 - 25887655
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtc 616  Q
    |||||| |||||||||||  |||||||   ||||||| ||||||||||||||| ||||||  |||||  ||||| ||||||| ||||| | | || |  |    
T  25887775 gtcaggtttaaaataaagtttttgacagattaatagatcagacttaggctttaatttttttcactagatctgacatatttaagcaaagcccgactcgacc 25887676  T
Q  617 cggcctattcccacccttaat 637  Q
    || ||||||||||||| ||||    
T  25887675 cgacctattcccacccctaat 25887655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 519 - 598
Target Start/End: Complemental strand, 10583036 - 10582957
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    ||||||| | |||||||||||||||   ||||||  ||| ||||| ||||||||||||||||||| |||  |||||||||    
T  10583036 caggcttcatataaagcctttgacagattaataggtcaggcttagactttagttttttcaactagacctaccctatttaa 10582957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 567 - 604
Target Start/End: Complemental strand, 27209094 - 27209057
Alignment:
Q  567 ttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||||||||||||||||| |||||||||| |||||    
T  27209094 ttagttttttcaactaggcctaacctatttaagcaaag 27209057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 518 - 603
Target Start/End: Complemental strand, 27418676 - 27418592
Alignment:
Q  518 tcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaa 603  Q
    |||| ||||||||||||| |||||||| |||||| |  |||||||  ||||| ||||||||| ||| ||| |||||||||| ||||    
T  27418676 tcagacttaaaataaagcatttgacatactaatatattagacttaaactttaattttttcaa-tagacctaacctatttaagcaaa 27418592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 517 - 595
Target Start/End: Original strand, 21857754 - 21857832
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatt 595  Q
    |||||||||||||||||| |||||||| ||||||||  |||||||||||||||||||||| ||||||||  ||||||||    
T  21857754 gtcaggcttaaaataaagtctttgacaggctaataggtcagacttaggctttagtttttttaactaggctcgacctatt 21857832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 523 - 606
Target Start/End: Original strand, 5515649 - 5515732
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtc 606  Q
    ||||||||||| | ||||||| |||||||    || ||||| |||||||||||||||||||| ||||||||||||| |||||||    
T  5515649 cttaaaataaaacatttgacaagctaataagttaggcttagactttagttttttcaactaggtctgacctatttaagcaaagtc 5515732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 579
Target Start/End: Complemental strand, 9822433 - 9822371
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaa 579  Q
    ||||| ||||||||||||  ||||||| | |||||| ||| |||| |||||||||||||||||    
T  9822433 gtcagacttaaaataaagtttttgacaggttaataggccaaacttgggctttagttttttcaa 9822371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 579
Target Start/End: Complemental strand, 10724358 - 10724296
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaa 579  Q
    ||||| ||||||||||||  ||||||| | |||||| ||| |||| |||||||||||||||||    
T  10724358 gtcagacttaaaataaagtttttgacaggttaataggccaaacttgggctttagttttttcaa 10724296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 559 - 632
Target Start/End: Original strand, 3526171 - 3526244
Alignment:
Q  559 cttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcctattcccaccc 632  Q
    ||||||| |||||||| ||||| ||| | ||||||||||| ||||| | | || |||||||| |||||||||||    
T  3526171 cttaggccttagttttatcaaccaggtcagacctatttaagcaaagcccgactcggtccggcttattcccaccc 3526244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0004 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0004
Description:

Target: scaffold0004; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 519 - 604
Target Start/End: Complemental strand, 33821 - 33736
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    |||||||||||||||||||| |||  |||||||| |||||||||||||||||||||||||| |||||  | ||||||||| |||||    
T  33821 caggcttaaaataaagccttcgacgggctaataggccagacttaggctttagttttttcaaataggctcggcctatttaagcaaag 33736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 583
Target Start/End: Original strand, 8710947 - 8711022
Alignment:
Q  508 aaaggcaaagtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactag 583  Q
    |||||| | |||| |||||||||||||||||||| | |||||||| ||||||||| |||| |||||||||||||||    
T  8710947 aaaggccaggtcaagcttaaaataaagcctttgaaaggctaataggccagacttaagcttaagttttttcaactag 8711022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 508 - 583
Target Start/End: Original strand, 9062834 - 9062909
Alignment:
Q  508 aaaggcaaagtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactag 583  Q
    |||||| | |||| |||||||||||||||||||| | |||||||| ||||||||| |||| |||||||||||||||    
T  9062834 aaaggccaggtcaagcttaaaataaagcctttgaaaggctaataggccagacttaagcttaagttttttcaactag 9062909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 517 - 603
Target Start/End: Complemental strand, 50496272 - 50496185
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagtt-ttttcaactaggcctgacctatttaaacaaa 603  Q
    ||||| ||||||||||||| ||||| | |||||||| ||||||||||||||||||| |||||||||||  ||||||| ||||| ||||    
T  50496272 gtcagacttaaaataaagcatttgataagctaataggccagacttaggctttagtttttttcaactagatctgacctgtttaagcaaa 50496185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 559 - 632
Target Start/End: Complemental strand, 9798008 - 9797935
Alignment:
Q  559 cttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcctattcccaccc 632  Q
    |||||||||||||||||||||||||||||  ||||||||| ||||||| | || || ||||| |||||||||||    
T  9798008 cttaggctttagttttttcaactaggcctagcctatttaagcaaagtccggctcggcccggcttattcccaccc 9797935  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 524 - 598
Target Start/End: Original strand, 43347002 - 43347076
Alignment:
Q  524 ttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||||||||||| || ||||||||||||   |||||||||||||||||||||| |||||||  |||| |||||||    
T  43347002 ttaaaataaagcattggacatgctaatatgtcagacttaggctttagttttttaaactaggtatgacttatttaa 43347076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 517 - 604
Target Start/End: Complemental strand, 44027862 - 44027775
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||| ||||||||||||||||||||    ||| |||||| ||||||| ||||| ||||||||||||||||| |||||||||| |||||    
T  44027862 gtcagacttaaaataaagcctttgaccaa-taaaagaccaagacttagactttaattttttcaactaggcctaacctatttaagcaaag 44027775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 520 - 603
Target Start/End: Original strand, 4958028 - 4958111
Alignment:
Q  520 aggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaa 603  Q
    ||||||||||||||||||||||||  |||||||  ||| ||||| ||||| |||||||| ||| ||  | ||||||||| ||||    
T  4958028 aggcttaaaataaagcctttgacagactaataggtcaggcttagactttaattttttcatctaagctcggcctatttaagcaaa 4958111  T

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Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 559 - 598
Target Start/End: Original strand, 50385613 - 50385652
Alignment:
Q  559 cttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||||||||||||||||||||||||||  |||||||||||    
T  50385613 cttaggctttagttttttcaactaggctcgacctatttaa 50385652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 555 - 604
Target Start/End: Complemental strand, 11589744 - 11589695
Alignment:
Q  555 cagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    |||||||| |||||||||| || ||||||| ||||||||||||| |||||    
T  11589744 cagacttaagctttagtttcttgaactaggtctgacctatttaagcaaag 11589695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 517 - 598
Target Start/End: Complemental strand, 43106302 - 43106221
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    ||||| |||||||||||| |||||| |  ||||||||| ||| ||  |||||| |||||||||||||   ||||||||||||    
T  43106302 gtcagacttaaaataaagtctttgagagactaatagactagatttgagctttaattttttcaactagatttgacctatttaa 43106221  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000005; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 507 - 604
Target Start/End: Complemental strand, 5305520 - 5305423
Alignment:
Q  507 aaaaggcaaagtcaggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||| | ||||||||||||||||||||||||||  | ||| || ||| | ||||||| |||||||||||||||||||||| ||||||||| |||||    
T  5305520 aaaaggccaggtcaggcttaaaataaagcctttgacggg-taaaaggccaagtcttaggccttagttttttcaactaggcctggcctatttaagcaaag 5305423  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 523 - 637
Target Start/End: Original strand, 30378896 - 30379010
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||||| ||||||| ||||||||  ||| |||| | ||||||||||||||||||||  ||||||||||| || |||||  || |  ||| |||    
T  30378896 cttaaaataaagcatttgacaagctaataggtcaggcttaagttttagttttttcaactaggctcgacctatttaagcatagtctagctcgacccgacct 30378995  T
Q  623 attcccacccttaat 637  Q
    |||||||||| ||||    
T  30378996 attcccacccctaat 30379010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 507 - 604
Target Start/End: Complemental strand, 12068600 - 12068504
Alignment:
Q  507 aaaaggcaaagtcaggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||| ||| ||| ||||||||||||||||||||| || || ||   || |||||||||||||||||||||||||||||  ||||||||| |||||    
T  12068600 aaaaggccaagccagacttaaaataaagcctttgacaggcaaa-aggtaaggcttaggctttagttttttcaactaggcctagcctatttaagcaaag 12068504  T

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Target: chr2; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 545 - 604
Target Start/End: Complemental strand, 30617164 - 30617105
Alignment:
Q  545 gctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    ||||||||  ||| |||||||||||||||||||||||||||||| ||||||||| |||||    
T  30617164 gctaataggtcaggcttaggctttagttttttcaactaggcctggcctatttaagcaaag 30617105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 531 - 632
Target Start/End: Complemental strand, 12016432 - 12016331
Alignment:
Q  531 aaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcctattcccac 630  Q
    ||||| ||||||| |||||||| ||||  ||| |||||| |||||| ||| |  |||||||||||||| ||||||| | ||||| ||| |||||||||||    
T  12016432 aaagcttttgacaggctaataggccaggtttaagctttaatttttttaaccaaacctgacctatttaagcaaagtccggcttggcccgacctattcccac 12016333  T
Q  631 cc 632  Q
    ||    
T  12016332 cc 12016331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 517 - 633
Target Start/End: Complemental strand, 38119584 - 38119468
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggt 615  Q
    ||||||||||||||||| ||||||||  | ||| |||||| |  |||||||||| ||||||||||||||||| |||||||||| ||||| ||| || ||     
T  38119584 gtcaggcttaaaataaaacctttgaccgg-taaaagaccaaggtttaggctttatttttttcaactaggcctaacctatttaagcaaagcctggctcggc 38119486  T
Q  616 ccggcctattcccaccct 633  Q
    || ||  |||||||||||    
T  38119485 ccagctcattcccaccct 38119468  T

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Target: chr2; HSP #7
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 519 - 598
Target Start/End: Complemental strand, 15609503 - 15609424
Alignment:
Q  519 caggcttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||| ||||| |||||||||||| | |||||||    ||||||| ||||||||||| ||||||||| |||||||||||||    
T  15609503 caggtttaaactaaagcctttgagaggctaatatgttagacttaagctttagttttatcaactaggtctgacctatttaa 15609424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 523 - 598
Target Start/End: Original strand, 30375732 - 30375807
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    ||||||||||| | ||||| |  ||||||| |||| |||| ||||||||||||||||||||||  |||||||||||    
T  30375732 cttaaaataaaacatttgatagactaataggccaggcttaagctttagttttttcaactaggctcgacctatttaa 30375807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 522 - 604
Target Start/End: Original strand, 38855656 - 38855738
Alignment:
Q  522 gcttaaaataaagcctttgacatgctaatagacca-gacttaggctttagttttttcaactaggcctgacctatttaaacaaag 604  Q
    |||||||||||||||||||||  | ||| || ||| | ||||||| |||||||||||||||||||||  ||||||||| |||||    
T  38855656 gcttaaaataaagcctttgacggg-taaaaggccaaggcttaggccttagttttttcaactaggcctagcctatttaagcaaag 38855738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 517 - 598
Target Start/End: Original strand, 42472532 - 42472613
Alignment:
Q  517 gtcaggcttaaaataaagcctttgacatgctaatagacc-agacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||| |||||||||||||||||| ||| | ||| ||||| |||||||| | |||||||||||||||||  | |||||||||||    
T  42472532 gtcatgcttaaaataaagcctttcacagg-taaaagacctagacttagaccttagttttttcaactagatcagacctatttaa 42472613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 545 - 598
Target Start/End: Original strand, 19284793 - 19284846
Alignment:
Q  545 gctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaa 598  Q
    |||||||| ||||||||||||||||  |||||||||||||| || | |||||||    
T  19284793 gctaataggccagacttaggctttacgtttttcaactaggcttggcgtatttaa 19284846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1944 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1944
Description:

Target: scaffold1944; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 637
Target Start/End: Complemental strand, 905 - 791
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||||| ||||  |  ||||||| ||||||||| |||||||||||||||||||| |  ||||||||||| || ||| | ||| || ||| |||    
T  905 cttaaaataaagcatttgttagactaataggccagacttaagctttagttttttcaactagactcgacctatttaagcatagtttatctcggcccgacct 806  T
Q  623 attcccacccttaat 637  Q
    ||| |||||| ||||    
T  805 atttccacccctaat 791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1790 (Bit Score: 39; Significance: 0.000000000001; HSPs: 1)
Name: scaffold1790
Description:

Target: scaffold1790; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 523 - 637
Target Start/End: Complemental strand, 1046 - 932
Alignment:
Q  523 cttaaaataaagcctttgacatgctaatagaccagacttaggctttagttttttcaactaggcctgacctatttaaacaaagtctgtcttggtccggcct 622  Q
    ||||||||||||| ||||  |  ||||||| ||||||||| |||||||||||||||||||| |  ||||||||||| || ||| | ||| || ||| |||    
T  1046 cttaaaataaagcatttgttagactaataggccagacttaagctttagttttttcaactagactcgacctatttaagcatagtttatctcggcccgacct 947  T
Q  623 attcccacccttaat 637  Q
    ||| |||||| ||||    
T  946 atttccacccctaat 932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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