View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_20 (Length: 394)
Name: NF8928_low_20
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_20 |
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Alignment Details
Target: chr8 (Bit Score: 339; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 339; E-Value: 0
Query Start/End: Original strand, 3 - 379
Target Start/End: Original strand, 37309870 - 37310249
Alignment:
| Q |
3 |
gcttttagaaccttaatgttatcctggtgagatgtctcaaaaaggtgctgaagtgtttgaaatgcttctttctgtttgttgtcatctgcatcataacata |
102 |
Q |
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| T |
37309870 |
gcttttagaaccttaatgttatcctggtgagatgtctcaaaaaggtgctgaagtgtttgaaatgcttctttctgtttgttgtcatctgcatcataacata |
37309969 |
T |
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| Q |
103 |
gcgtttggacgtgtagagattagagaaattttacccaaagaaaaaccatacagtgtttcttgattaacacacatgtgtaattactgaatccagtaactaa |
202 |
Q |
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| T |
37309970 |
gcgtttggacgtatagagattagagaaattttacccaaagaaaaaccata--gtgtttcttgattaacacacatgtgtaattactgaatccagtaactaa |
37310067 |
T |
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| Q |
203 |
attgactt-----ttgttcgacaagttcaattctatctgctatccactatattttagcaaacaaagccttaattacctaaatgttgacgacagatagcga |
297 |
Q |
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|||||||| ||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37310068 |
attgacttaggctttgttcgacaagttcaattctatcttctatccgctatattttagcaaacaaagccttaattacctaaatgttgacgacagatagcga |
37310167 |
T |
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| Q |
298 |
gctgattttgaaggtgaccattcatgctgtctagcttctgagtcaaactggaaagctcccatgtctctgttgttgatgtcat |
379 |
Q |
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| T |
37310168 |
gctgattttgaaggtgaccattcatgctgtctagcttctgagtcaaactggaaagctcccatgtctctgttgttgatgtcat |
37310249 |
T |
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