View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_21 (Length: 385)
Name: NF8928_low_21
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 128; Significance: 4e-66; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 15 - 187
Target Start/End: Complemental strand, 15683143 - 15682967
Alignment:
| Q |
15 |
tactctttaataatcaatgtattggtcttacccaatgcaccacacacacatatttgaatgacaaatacaaaaataaata----tattagttatacggtga |
110 |
Q |
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| T |
15683143 |
tactctttaataatcaatgtattggtctcacccaatgcaccacacacacatatttgaatgacaaatacaaaaaaaaataaaaatattagttttacggtga |
15683044 |
T |
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| Q |
111 |
taataattggataaaagatgagagacactagagaagtggaaatctgagaagtaactaatccactagcatttgcttat |
187 |
Q |
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| T |
15683043 |
taataattagataaaagatgagagatactagagaaatggaaatttgataagtaactaatccactagcatttgcttat |
15682967 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 251 - 371
Target Start/End: Complemental strand, 15682903 - 15682784
Alignment:
| Q |
251 |
gcattaattgataaaagcttatattgattgatcccacactgtatcttttttcatgtcttcttcaaatttgttgtccagnnnnnnntggtttagggcgagc |
350 |
Q |
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| T |
15682903 |
gcattaattgataaaagcttatattgattgatcccacactgtatcttttttcatgtcttcttcaaatttgttgtccag-aaaaaatggtttagggcgagc |
15682805 |
T |
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| Q |
351 |
catttttcaaaggagaaagat |
371 |
Q |
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| T |
15682804 |
catttttcaaagcaaaaagat |
15682784 |
T |
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