View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_26 (Length: 334)
Name: NF8928_low_26
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_26 |
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Alignment Details
Target: chr2 (Bit Score: 261; Significance: 1e-145; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 261; E-Value: 1e-145
Query Start/End: Original strand, 1 - 313
Target Start/End: Original strand, 17772764 - 17773076
Alignment:
| Q |
1 |
aggttgccaattactgccagaaacatcttcactcagttttggttgaggagatagaagctgcagaatcaagtttatccgaaaacaatgaaaaagacaattg |
100 |
Q |
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| T |
17772764 |
aggttgcgaaatactgccagaaacatcttcattcagttttggttgaggagatagaagctgcagaatcaagtttatccgaaaataaggaaaaagacaattg |
17772863 |
T |
|
| Q |
101 |
gcaagatcaatggaagaaagtactcaccaattgctttcaaaaagtagatgatgtgattgtaggagttcctgaagctaatgttggaaagaacggtaacgac |
200 |
Q |
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| T |
17772864 |
gcaagaccaatggaagaaagtactcaccaattgctttcaaaaagtagatgatgtgattgtaggagttcctgaagctaatgttggaaagaacagtaatgac |
17772963 |
T |
|
| Q |
201 |
ggatctgagttaagtactgaagaaactcttgctcccgagactgttggatcaactgcactggttgcaattttgactcaaaaccacataatagttgcgaatt |
300 |
Q |
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| T |
17772964 |
ggatctgagtcaagtactgaggaaactcttgctcccgagactgttggatccactgcactggttgcaattttgactcaaaaccacataatagttgcgaatt |
17773063 |
T |
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| Q |
301 |
gcggtgattcaag |
313 |
Q |
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| || |||||||| |
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| T |
17773064 |
gtggggattcaag |
17773076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 7 - 71
Target Start/End: Complemental strand, 23909554 - 23909490
Alignment:
| Q |
7 |
ccaattactgccagaaacatcttcactcagttttggttgaggagatagaagctgcagaatcaagt |
71 |
Q |
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| T |
23909554 |
ccaattacttccagaaacatcttcattcagttttggttgagaagatagaaactgcagaatcaagt |
23909490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 222 - 310
Target Start/End: Complemental strand, 52218914 - 52218826
Alignment:
| Q |
222 |
gaaactcttgctcccgagactgttggatcaactgcactggttgcaattttgactcaaaaccacataatagttgcgaattgcggtgattc |
310 |
Q |
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|||||||||||||| ||||||| ||| || |||||| ||||||| ||||| | ||||| ||||||||| ||||| ||||| || ||||| |
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| T |
52218914 |
gaaactcttgctcctgagactgctggctccactgcagtggttgccattttaaatcaaacccacataattgttgcaaattgtggggattc |
52218826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 7 - 47
Target Start/End: Original strand, 23919691 - 23919731
Alignment:
| Q |
7 |
ccaattactgccagaaacatcttcactcagttttggttgag |
47 |
Q |
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||||||||||||||||||||||||| ||||||||| ||||| |
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| T |
23919691 |
ccaattactgccagaaacatcttcattcagttttgattgag |
23919731 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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