View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_27 (Length: 306)
Name: NF8928_low_27
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 81; Significance: 4e-38; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 81; E-Value: 4e-38
Query Start/End: Original strand, 1 - 126
Target Start/End: Original strand, 32605736 - 32605852
Alignment:
| Q |
1 |
ttaagtaagagtgggtgttgtacatgtggacaccatttttaaagatacgaatgagtaaaacgttatcatttctcttgaggcttttacctctaataactaa |
100 |
Q |
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| T |
32605736 |
ttaagtaagagtgggtgttgtacatgtggacaccatttttaaagatacgaatgagtaaaacgttatcatttctctaggggc--------ctaataactaa |
32605827 |
T |
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| Q |
101 |
taacaactaccctaagtcaattcctt |
126 |
Q |
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| T |
32605828 |
taacaa-taccctaagtcaattcctt |
32605852 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 142 - 250
Target Start/End: Complemental strand, 8076575 - 8076466
Alignment:
| Q |
142 |
ggaaaattttacatagacaccttttatttt-agatatttttatacatcccatgtactaggaagaaagaagaatagatggaagagaaagtgtgcctatgtt |
240 |
Q |
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| T |
8076575 |
ggaaaatgttacatagacaccatttattctcatacacttttgtacaccccatgcactaggaagagagaagaggagaggaaagagaaagtgtgcttgtgcg |
8076476 |
T |
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| Q |
241 |
gggtccacgt |
250 |
Q |
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| T |
8076475 |
gggtccacgt |
8076466 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 179 - 269
Target Start/End: Complemental strand, 38296347 - 38296257
Alignment:
| Q |
179 |
tttatacatcccatgtactaggaagaaagaagaatagatggaagagaaagtgtgcctatgttgggtccacgtagtcacatgtctgattttt |
269 |
Q |
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| T |
38296347 |
tttatacaccccatgtagtaagaagaaagaagaggagatgaatgagaaagtgtgcttgtgttggatccacgtagctacgtgtctgattttt |
38296257 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 183 - 239
Target Start/End: Original strand, 42354548 - 42354604
Alignment:
| Q |
183 |
tacatcccatgtactaggaagaaagaagaatagatggaagagaaagtgtgcctatgt |
239 |
Q |
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| T |
42354548 |
tacaccccatgcactaggaagagagaagagaagatgaaagagaaagtgtgcttatgt |
42354604 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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