View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8928_low_29 (Length: 298)
Name: NF8928_low_29
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_29 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 198; Significance: 1e-108; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 11 - 249
Target Start/End: Complemental strand, 11333651 - 11333407
Alignment:
| Q |
11 |
gagtttggagttggatcatgatgggatattgaatgcttggtctgataaaggttctctttatgttgatggttgtgatgatgctcctcagactgttcctgat |
110 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
|
|
| T |
11333651 |
gagtttgaagttggatcatgatgggatattgaatgcttggtctgataaaggttctctttatgttgatggttgtgatgaggctcctcagactgttcctgat |
11333552 |
T |
|
| Q |
111 |
ttgttcaatggtggaatccttcccaatgtaattttactaatttttatttcaattttaagatttgtttcatacatataaatatttgattcgcaatgatttt |
210 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||| |||||||||||||||||| ||| |
|
|
| T |
11333551 |
ttgttcaatggtggaatccttcccaatgtaattttactaatttttatttcaatttttagatttggttcatacatatacatatttgattcgcaatgagttt |
11333452 |
T |
|
| Q |
211 |
gacaaaatcacagtatc------atccgatcggctttgaagttga |
249 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
11333451 |
gacaaaatcacagtatcatcgtgatccgatcggctttgaagttga |
11333407 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 249 - 277
Target Start/End: Original strand, 25669030 - 25669058
Alignment:
| Q |
249 |
attcacagtgagtttgacaaaatcacagt |
277 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
25669030 |
attcacagtgagtttgacaaaatcacagt |
25669058 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University