View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_3 (Length: 694)
Name: NF8928_low_3
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 535; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 535; E-Value: 0
Query Start/End: Original strand, 14 - 552
Target Start/End: Complemental strand, 31822070 - 31821532
Alignment:
| Q |
14 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
113 |
Q |
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| T |
31822070 |
attatacttgtgattaatcattatgttggcatcaatatattccctacttttgaccacaaagagaaaaagttaaagaagacaaacctcaattctgaaaata |
31821971 |
T |
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| Q |
114 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
213 |
Q |
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| T |
31821970 |
gagagagaaccagttttgttcaagctctttttgctttgaggaataacagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctc |
31821871 |
T |
|
| Q |
214 |
caacaaacataagcctcttccctctaagcttctcaagtagaactcttggtttgaaccttaataacaagtttatacagatgtaatcaacattaacaacact |
313 |
Q |
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| T |
31821870 |
caacaaacataagcctcttccctctaagcttctcaagtagaactcttggtttgaaccttaataacaagtttatacaaatgtaatcaacattaacaacact |
31821771 |
T |
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| Q |
314 |
atcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaaa |
413 |
Q |
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| T |
31821770 |
atcaaactaaaacaagaaatttgaaaaatgtaaagaattttaatgtgcttacttcggtaaagaacaatctcttggctgccacctccaattctgatacaaa |
31821671 |
T |
|
| Q |
414 |
gaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccatt |
513 |
Q |
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| T |
31821670 |
gaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttcttctttgtataaaggatgtgtcacattatcaagaacccatt |
31821571 |
T |
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| Q |
514 |
tccctgtaaacaaatcacaatcttcttgaggtaacacaa |
552 |
Q |
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| T |
31821570 |
tccctgtaaacaaatcacaatcttcttgaggtaacacaa |
31821532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 591 - 674
Target Start/End: Complemental strand, 31821493 - 31821410
Alignment:
| Q |
591 |
gttaacacaacgtctttcaaatcaaccggttcttggatttcctcagaatccttaacctcagagtttttgccatctctttgaaca |
674 |
Q |
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| T |
31821493 |
gttaacacaacgtctttcaaattaaccggttcttggatttcctcagaatccttaacctcagagtttttgccatctctttgaaca |
31821410 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 76; Significance: 9e-35; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 374 - 537
Target Start/End: Complemental strand, 35688616 - 35688453
Alignment:
| Q |
374 |
agaacaatctcttggctgccacctccaattctgatacaaagaatcacttcttccattcttcatgcatgtaacttgtgaagtaagaaattcacattgttct |
473 |
Q |
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| T |
35688616 |
agaacagtcttttggctgccatttccaattctgatacaaagaatcacgtcttccattcctcatacatgtaacttgagaagtgagaaactcacattcatct |
35688517 |
T |
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| Q |
474 |
tctttgtataaaggatgtgtcacattatcaagaacccatttccctgtaaacaaatcacaatctt |
537 |
Q |
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| T |
35688516 |
tctttatacaaaggatgtgtcacgttatctaaaacccatttaccattgaacaagtcacaatctt |
35688453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 159 - 246
Target Start/End: Complemental strand, 35688829 - 35688742
Alignment:
| Q |
159 |
acagattgaaccaaacaaatcattgattcccattggttcctattcaatgagtctccaacaaacataagcctcttccctctaagcttct |
246 |
Q |
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||||||||||||| ||||| |||||||||||| ||||| |||||||| ||||||||||||||||| | |||||||||||||| ||||| |
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| T |
35688829 |
acagattgaaccatacaaaccattgattcccactggtttctattcaaagagtctccaacaaacattaacctcttccctctaatcttct |
35688742 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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