View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8928_low_36 (Length: 214)

Name: NF8928_low_36
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8928_low_36
NF8928_low_36
[»] chr2 (7 HSPs)
chr2 (126-211)||(17772685-17772770)
chr2 (1-40)||(34399248-34399287)
chr2 (1-40)||(43077338-43077377)
chr2 (1-41)||(16021849-16021889)
chr2 (1-33)||(17213365-17213397)
chr2 (6-34)||(17772559-17772587)
chr2 (5-33)||(26747923-26747951)
[»] chr6 (5 HSPs)
chr6 (1-40)||(21887741-21887780)
chr6 (1-41)||(879310-879350)
chr6 (1-40)||(1252211-1252250)
chr6 (1-40)||(26470879-26470918)
chr6 (1-41)||(847842-847882)
[»] chr4 (9 HSPs)
chr4 (152-192)||(23909571-23909611)
chr4 (1-40)||(9840409-9840448)
chr4 (1-32)||(51978794-51978825)
chr4 (1-40)||(53599942-53599981)
chr4 (1-40)||(56576259-56576298)
chr4 (43-104)||(34284195-34284256)
chr4 (4-40)||(32239452-32239488)
chr4 (1-33)||(34284089-34284121)
chr4 (1-41)||(53219177-53219217)
[»] chr8 (7 HSPs)
chr8 (1-40)||(12342769-12342808)
chr8 (1-40)||(13327825-13327864)
chr8 (1-40)||(34046897-34046936)
chr8 (1-32)||(38238963-38238994)
chr8 (1-40)||(45281532-45281571)
chr8 (5-34)||(35593692-35593721)
chr8 (4-40)||(35028655-35028691)
[»] chr5 (6 HSPs)
chr5 (1-40)||(2134058-2134097)
chr5 (1-40)||(18465729-18465768)
chr5 (1-40)||(42911578-42911617)
chr5 (1-41)||(12305695-12305735)
chr5 (1-41)||(33239348-33239388)
chr5 (4-40)||(39893961-39893997)
[»] chr3 (4 HSPs)
chr3 (1-40)||(43775551-43775590)
chr3 (1-40)||(51219245-51219284)
chr3 (1-33)||(3035581-3035613)
chr3 (1-33)||(23771333-23771365)
[»] chr1 (2 HSPs)
chr1 (1-40)||(44818500-44818539)
chr1 (4-40)||(49908334-49908370)
[»] chr7 (1 HSPs)
chr7 (4-41)||(41480646-41480683)


Alignment Details
Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 17772685 - 17772770
Alignment:
Q  126 ggaacggagagagtatacaatttgtgtgtattgttgaagttgattcattccatttaccaagtttgtgtggtggcttcataggttgc 211  Q
    ||||| |||||| |||||  |||||||||||| ||||||||||||||||||||||| || ||||||||| ||| ||| ||||||||    
T  17772685 ggaaccgagagaatatacggtttgtgtgtatttttgaagttgattcattccatttagcatgtttgtgtgatggtttcgtaggttgc 17772770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34399248 - 34399287
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  34399248 ttcaaagttcaatgcaacattaaatattgttttaccaata 34399287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 43077338 - 43077377
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  43077338 ttcaaagttcaatgcaacattaaatattgttttaccaata 43077377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 16021849 - 16021889
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    |||||||||||||| |||| |||||||||||||| ||||||    
T  16021849 ttcaaagttcaatggaacaataactattgttttgtcaataa 16021889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 17213397 - 17213365
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgtttt 33  Q
    |||||||||||||||| ||||||||||||||||    
T  17213397 ttcaaagttcaatgcatcattaactattgtttt 17213365  T

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Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 6 - 34
Target Start/End: Original strand, 17772559 - 17772587
Alignment:
Q  6 agttcaatgcaacattaactattgttttg 34  Q
    |||||||||||||||||||||||||||||    
T  17772559 agttcaatgcaacattaactattgttttg 17772587  T

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Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 5 - 33
Target Start/End: Original strand, 26747923 - 26747951
Alignment:
Q  5 aagttcaatgcaacattaactattgtttt 33  Q
    |||||||||||||||||||||||||||||    
T  26747923 aagttcaatgcaacattaactattgtttt 26747951  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 21887780 - 21887741
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    |||||||||||||||||||||||||||||||||| |||||    
T  21887780 ttcaaagttcaatgcaacattaactattgttttggcaata 21887741  T

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Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 879310 - 879350
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    ||||||||||||||||||||||| |||||||||| ||||||    
T  879310 ttcaaagttcaatgcaacattaattattgttttgtcaataa 879350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 1252211 - 1252250
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  1252211 ttcaaagttcaatgcaacattaaatattgttttaccaata 1252250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 26470918 - 26470879
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  26470918 ttcaaagttcaatgcaacattaaatgttgttttgccaata 26470879  T

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Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 847842 - 847882
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  847842 ttcaaagttcaatgcaacattaattattgctttgtcaataa 847882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 152 - 192
Target Start/End: Complemental strand, 23909611 - 23909571
Alignment:
Q  152 tgtattgttgaagttgattcattccatttaccaagtttgtg 192  Q
    ||||||||||||||||||||||||||||||| ||| |||||    
T  23909611 tgtattgttgaagttgattcattccatttactaagattgtg 23909571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 9840448 - 9840409
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||| |||||||||||||||||||||||||| |||||    
T  9840448 ttcaaagctcaatgcaacattaactattgttttgtcaata 9840409  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 51978825 - 51978794
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  51978825 ttcaaagttcaatgcaacattaactattgttt 51978794  T

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Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 53599981 - 53599942
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  53599981 ttcaaagttcaatgcaacattaaatattgttttaccaata 53599942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 56576298 - 56576259
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  56576298 ttcaaagttcaatgcaacattaaatattgttttaccaata 56576259  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 43 - 104
Target Start/End: Original strand, 34284195 - 34284256
Alignment:
Q  43 aaaaatacaaatagttacttcaaaggtaacaatatgtattggttttcttggtatgtgtaaat 104  Q
    |||||||||||||||| | ||||| ||||||| || |||| ||||||| ||||| |||||||    
T  34284195 aaaaatacaaatagtttcatcaaaagtaacaaaatttattagttttctcggtatatgtaaat 34284256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 32239452 - 32239488
Alignment:
Q  4 aaagttcaatgcaacattaactattgttttgccaata 40  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  32239452 aaagttcaatgcaacattaaatattgttttaccaata 32239488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34284089 - 34284121
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgtttt 33  Q
    |||||||||||||||||||||| ||||||||||    
T  34284089 ttcaaagttcaatgcaacattatctattgtttt 34284121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 53219217 - 53219177
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    ||||||||||||||||||||||| ||||| |||| ||||||    
T  53219217 ttcaaagttcaatgcaacattaattattgatttgtcaataa 53219177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 32; Significance: 0.000000005; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 12342808 - 12342769
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  12342808 ttcaaagttcaatgcaacattaaatattgttttaccaata 12342769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 13327825 - 13327864
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  13327825 ttcaaagttcaatgcaacattaaatgttgttttgccaata 13327864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 34046897 - 34046936
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  34046897 ttcaaagttcaatgcaacattaaatattgttttaccaata 34046936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Original strand, 38238963 - 38238994
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttt 32  Q
    ||||||||||||||||||||||||||||||||    
T  38238963 ttcaaagttcaatgcaacattaactattgttt 38238994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 45281571 - 45281532
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  45281571 ttcaaagttcaatgcaacattaaatgttgttttgccaata 45281532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 5 - 34
Target Start/End: Complemental strand, 35593721 - 35593692
Alignment:
Q  5 aagttcaatgcaacattaactattgttttg 34  Q
    ||||||||||||||||||||||||||||||    
T  35593721 aagttcaatgcaacattaactattgttttg 35593692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Original strand, 35028655 - 35028691
Alignment:
Q  4 aaagttcaatgcaacattaactattgttttgccaata 40  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  35028655 aaagttcaatgcaacattaaatattgttttaccaata 35028691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 2134097 - 2134058
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  2134097 ttcaaagttcaatgcaacattaaatgttgttttgccaata 2134058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 18465729 - 18465768
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  18465729 ttcaaagttcaatgcaacattaaatattgttttaccaata 18465768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 42911578 - 42911617
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  42911578 ttcaaagttcaatgcaacattaaatattgttttaccaata 42911617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Complemental strand, 12305735 - 12305695
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    ||||||||||||||||||||| | |||||||||| ||||||    
T  12305735 ttcaaagttcaatgcaacattgattattgttttgtcaataa 12305695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 41
Target Start/End: Original strand, 33239348 - 33239388
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaataa 41  Q
    ||||||||||||||||||||||| | |||||||| ||||||    
T  33239348 ttcaaagttcaatgcaacattaatttttgttttgtcaataa 33239388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 39893997 - 39893961
Alignment:
Q  4 aaagttcaatgcaacattaactattgttttgccaata 40  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  39893997 aaagttcaatgcaacattaaatattgttttaccaata 39893961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 43775590 - 43775551
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  43775590 ttcaaagttcaatgcaacattaaatattgttttaccaata 43775551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 51219284 - 51219245
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  51219284 ttcaaagttcaatgcaacattaaatattgttttaccaata 51219245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 3035613 - 3035581
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgtttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  3035613 ttcaaagttcaatgcaacattaaatattgtttt 3035581  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 23771333 - 23771365
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgtttt 33  Q
    ||||||||||||||||||||||| |||||||||    
T  23771333 ttcaaagttcaatgcaacattaaatattgtttt 23771365  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 40
Target Start/End: Original strand, 44818500 - 44818539
Alignment:
Q  1 ttcaaagttcaatgcaacattaactattgttttgccaata 40  Q
    ||||||||||||||||||||||| ||||||||| ||||||    
T  44818500 ttcaaagttcaatgcaacattaaatattgttttaccaata 44818539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 4 - 40
Target Start/End: Complemental strand, 49908370 - 49908334
Alignment:
Q  4 aaagttcaatgcaacattaactattgttttgccaata 40  Q
    |||||||||||||||||||| ||||||||| ||||||    
T  49908370 aaagttcaatgcaacattaaatattgttttaccaata 49908334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 4 - 41
Target Start/End: Complemental strand, 41480683 - 41480646
Alignment:
Q  4 aaagttcaatgcaacattaactattgttttgccaataa 41  Q
    |||||||||||||| |||||||||||||||| ||||||    
T  41480683 aaagttcaatgcaatattaactattgttttgtcaataa 41480646  T

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