View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_39 (Length: 204)
Name: NF8928_low_39
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_39 |
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Alignment Details
Target: chr5 (Bit Score: 65; Significance: 9e-29; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 36622537 - 36622601
Alignment:
| Q |
124 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcct |
188 |
Q |
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| T |
36622537 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcct |
36622601 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 57; E-Value: 5e-24
Query Start/End: Original strand, 124 - 188
Target Start/End: Original strand, 36633341 - 36633405
Alignment:
| Q |
124 |
acctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcct |
188 |
Q |
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| T |
36633341 |
acctttgtgacaaaaaataacacaccttgatcattgcattcaatggtaattttatctttaatcct |
36633405 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 126 - 188
Target Start/End: Original strand, 36627776 - 36627838
Alignment:
| Q |
126 |
ctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatctttaatcct |
188 |
Q |
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| T |
36627776 |
ctttgtgactaaaaacaacaccccttggtcattacattcaatggtaattctatctttaatcct |
36627838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36626834 - 36626878
Alignment:
| Q |
15 |
ataattctcttccatgttcacaattgcttcaatcccatctccatc |
59 |
Q |
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| T |
36626834 |
ataattatcttccatgttcacaatcgcttcaatcccatctccatc |
36626878 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 59
Target Start/End: Original strand, 36621604 - 36621644
Alignment:
| Q |
19 |
ttctcttccatgttcacaattgcttcaatcccatctccatc |
59 |
Q |
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|
| T |
36621604 |
ttctcttccatgttcacaacagcttcaatgccatctccatc |
36621644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 54 - 82
Target Start/End: Original strand, 36626886 - 36626914
Alignment:
| Q |
54 |
tccatcaaaaatataatattccttgaaga |
82 |
Q |
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|
||||||||||||||||||||||||||||| |
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|
| T |
36626886 |
tccatcaaaaatataatattccttgaaga |
36626914 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 59
Target Start/End: Original strand, 36632075 - 36632119
Alignment:
| Q |
15 |
ataattctcttccatgttcacaattgcttcaatcccatctccatc |
59 |
Q |
| |
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|||||| |||| ||||||||||| |||||||||||||||||||| |
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|
| T |
36632075 |
ataattatctttcatgttcacaagagcttcaatcccatctccatc |
36632119 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 53; Significance: 1e-21; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 126 - 182
Target Start/End: Complemental strand, 34320274 - 34320218
Alignment:
| Q |
126 |
ctttgtgaccaaaaataacacaccttgatcattacattcaatggtaattttatcttt |
182 |
Q |
| |
|
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
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|
| T |
34320274 |
ctttgtgaccaaaaatgacacaccttgatcattacattcaatggtaattttatcttt |
34320218 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000004
Query Start/End: Original strand, 16 - 59
Target Start/End: Complemental strand, 34321233 - 34321190
Alignment:
| Q |
16 |
taattctcttccatgttcacaattgcttcaatcccatctccatc |
59 |
Q |
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||||| ||||||||||||||||| ||||||||||| |||||||| |
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|
| T |
34321233 |
taattgtcttccatgttcacaatagcttcaatcccttctccatc |
34321190 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Complemental strand, 34329164 - 34329126
Alignment:
| Q |
144 |
cacaccttgatcattacattcaatggtaattttatcttt |
182 |
Q |
| |
|
||||||||||||||||||||| | ||||||||||||||| |
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|
| T |
34329164 |
cacaccttgatcattacattcgacggtaattttatcttt |
34329126 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 144 - 182
Target Start/End: Original strand, 45306918 - 45306956
Alignment:
| Q |
144 |
cacaccttgatcattacattcaatggtaattttatcttt |
182 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||| |
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| T |
45306918 |
cacaccttggtcgttacattcaatggtaattttatcttt |
45306956 |
T |
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