View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8928_low_4 (Length: 620)
Name: NF8928_low_4
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 533; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 533; E-Value: 0
Query Start/End: Original strand, 13 - 605
Target Start/End: Original strand, 44473530 - 44474123
Alignment:
| Q |
13 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473530 |
agcagagatccgtacaactttcttctcgtgcccaaaaacttgaagtggcacctgaaacattacagacaagtgaataaaatatcgcaaacaagaaaatgct |
44473629 |
T |
|
| Q |
113 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473630 |
ggcaagtaatgcactcatgaacattagagcaaaagaacaagatgttgcaattgtcatcagtttacttgacaaaaatacaggaaaaaaggcaaagtaatca |
44473729 |
T |
|
| Q |
213 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccattgtctgtgaaaggagtacaattt |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473730 |
tacaactgagtagggtttactctccgatgtaccgagctgtccaaaatcattgagaccagtagcataaacacatccattgtctgtgaaaggagtacaattt |
44473829 |
T |
|
| Q |
313 |
gtaagcccctactcgaacattacggagactcttcaaaagtcaccggactcatcaccaatttcaaagactgccacattgtagccatccagtggcataaaga |
412 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44473830 |
gtaagcccctactcgaacattacggagactcttcaaaagtcaccggactcatcaccaatttcaaagactgccacattgtagccatccagtggcataaaga |
44473929 |
T |
|
| Q |
413 |
aaactgttactaaaataaacaagcaacctcgaaaccatagacattccaaggaaccaccc-nnnnnnnnnnnnnnntcaaccgatcaattctcataaaatt |
511 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| |
|
|
| T |
44473930 |
aaactgttactaaaataaacaagcaacctcgaaaccatagacattccaaggaaccccccaaaaaaaaaaaaaaaatcaaccgatcaattctcataaaatt |
44474029 |
T |
|
| Q |
512 |
acacaacgacttagaataataacaaaattttattatacttgataaatagtactccctcgggttattttacatttcccaaagcaaccaaaatact |
605 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
44474030 |
acacaacgacttagaataataacaaaattttattatacttgataaatagtactccctcgggttattttacatttctcaaagcaaccaaaatact |
44474123 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University