View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8928_low_6 (Length: 619)

Name: NF8928_low_6
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8928_low_6
NF8928_low_6
[»] chr8 (2 HSPs)
chr8 (88-619)||(21131558-21132087)
chr8 (16-56)||(21131498-21131538)


Alignment Details
Target: chr8 (Bit Score: 437; Significance: 0; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 437; E-Value: 0
Query Start/End: Original strand, 88 - 619
Target Start/End: Original strand, 21131558 - 21132087
Alignment:
Q  88 cttgaatgaaatgcacacaggtggaactaaacctttcacttcttgaagatattagcgatgatattgatttctgtttcaaacttgcaaaggaggaatctgt 187  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  21131558 cttgaatgaaatgcacacaggtggaactaaacctttcacttcttgaagatattagcgatgatattgatttctgtttcaaacttgcaaaggaggaatctgt 21131657  T
Q  188 tatcattcttccaggtacaattatgaaaatcttgcttatttttgtgcgtctttttgttgagagtcatttcatttacatgtttggagaaaaatccttctct 287  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||  |||||||||||||||||||||    
T  21131658 tatcattcttccaggtacaattatgaaaatcttgcttatttttgtgcgtctttttgttgagagt--tttcatttacacatttggagaaaaatccttctct 21131755  T
Q  288 ttacacgtggcagaatttcacaattctgttttttcgtagttttttcctcatatttgtacaattacactagttccttaataagaataatgctaggaaaatg 387  Q
    |||||||||||||||||||||| |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  ||||||| ||||| ||||    
T  21131756 ttacacgtggcagaatttcacacttctgttttttcgtagttttttccttgtatttgtacaattacactagttccttaatagtaataatgataggagaatg 21131855  T
Q  388 ctggttcgtgcgaaaccaattcgatgaaattcgaccaacgcttgaaagccatgcgatgaatgataatatcgtaacaatatagcacgcttgaaattcgacg 487  Q
    |||||| |||||||||||| || | |||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  21131856 ctggttggtgcgaaaccaactcaacgaaattcgacaaatgcttgaaagccatgcgatgaatgataatatagtaacaatatagcacgcttgaaattcgacg 21131955  T
Q  488 aaagcttgaaagccatgtattgttttccactgtccaatttctgtttcattgcttttcgtggattaatgcattgtcctataaagcacacagctcgtaatga 587  Q
    |||||||||||||| |||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  21131956 aaagcttgaaagccgtgtattgttttccaccatccaatttctgtttcattgcttttcgtggattaatgcattgtcctataaagcacacagctcataatga 21132055  T
Q  588 taacaagtacagatatttactaaaaagtatca 619  Q
    ||||||||||||||||||||||||| ||||||    
T  21132056 taacaagtacagatatttactaaaatgtatca 21132087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 16 - 56
Target Start/End: Original strand, 21131498 - 21131538
Alignment:
Q  16 cagagtcagaatttgatggagaacattaaaagcaaaaactc 56  Q
    |||||||||||||| ||||||||||||||||||||||||||    
T  21131498 cagagtcagaattttatggagaacattaaaagcaaaaactc 21131538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University