View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8928_low_7 (Length: 613)
Name: NF8928_low_7
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_7 |
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Alignment Details
Target: chr7 (Bit Score: 508; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 508; E-Value: 0
Query Start/End: Original strand, 21 - 597
Target Start/End: Complemental strand, 33111268 - 33110692
Alignment:
| Q |
21 |
taatactccatgtaaactggagcatggatattgtgcatgccaagtttggaaagaagtctttgaaatggagctgattcaagttgcttggtgaagaagtcag |
120 |
Q |
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| T |
33111268 |
taatactccatgtaaactggagcatggatattgagcattccatgtttggaaagaagtctttgaaatggagctgattcaagttgcttggtgaagaagtcag |
33111169 |
T |
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| Q |
121 |
ctagttgattaatggaagtgatggggagaaggtgaaagagatgtgcttgcaatttctcacatacgatatgacagtcgatgtcaatgtgtttggtgcattc |
220 |
Q |
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| T |
33111168 |
ctagttgattaatggaagtgatggggagaaggtgaaagagatgtgcttgcaatttctcacaaacgaaatgacagtcgatgtcaatgtgtttggtgcattc |
33111069 |
T |
|
| Q |
221 |
atgaaatgtgggattagatgcaatatgtcttgctgattgactgtcacaatagagtaaagctggggaagtaaatgaaacttgaagatctctaatccgatag |
320 |
Q |
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| T |
33111068 |
atgaaatgtgggattagatgcaatatgtcttgctgattgactgtcacgatagagtaaagctggtgaagtaaatgaaacttgaagatctctaatccgatag |
33110969 |
T |
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| Q |
321 |
gtaagccactgaatttcacaagtagtagcagcaagcgcacgatgctcagtttctgaggaggatttagagacagctgcctgcttcttagaacgccaagtaa |
420 |
Q |
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| T |
33110968 |
gtaagccactgaatttcacaagtagtagcagcaagcgcacgatgctcagtttcagaggaggatttagagacagctgcccgcttcttagaacgccaagtaa |
33110869 |
T |
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| Q |
421 |
tgagtgacttacccnnnnnnntgcaaaagccagaaccacactttctggaagatggacaagtggcccaataagagtcactaaaggctttgagatgaagagc |
520 |
Q |
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| T |
33110868 |
tgagtgacttacccaaaaaaatgcaaaagccagaaccccactttctggaagatggacaagttgcccaataagagtcactaaaggctttgagatgaagagc |
33110769 |
T |
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| Q |
521 |
ggaagaagtaaggaccaagtttaacagagtggatatctgaaatggatgttcatgtgagaataacatcatcaacatat |
597 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33110768 |
gggagaagtaaggaccaagtttaacagagtggatatctgaaatggatgttcatgtgagaataacatcatcaacatat |
33110692 |
T |
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