View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8928_low_9 (Length: 498)
Name: NF8928_low_9
Description: NF8928
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8928_low_9 |
 | |
|
| [»] scaffold0707 (1 HSPs) |
| | |
|
| [»] scaffold0649 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 422; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 19 - 488
Target Start/End: Complemental strand, 33575666 - 33575197
Alignment:
| Q |
19 |
ttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgcaagaaccaacaaccagaggaaattcac |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
33575666 |
ttccaaacatagaaccagtacttaatgtgtgtcactaagcgtggcctagaaagtaaaaatatcaatccgttgtaagaaccaacaaccagaggaaattcac |
33575567 |
T |
|
| Q |
119 |
ttattatgggacagcggaagtggttaaaggcaacagcaattgaccgagtctcacgtacaagatgcaaggacaagacactagtctcacagtctgtaagctg |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||| ||| |||||||| |
|
|
| T |
33575566 |
ttattatgggacagcggaagtggttaaaggcaacagcaattgacggagtctcacgtacaagatgcaaggacaagacactagtatcacggtcagtaagctg |
33575467 |
T |
|
| Q |
219 |
tgttatcaagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaat |
318 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33575466 |
tgttattaagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttctatgatttgcttacgcacctgaat |
33575367 |
T |
|
| Q |
319 |
tgcgtgatggttttcacgctgaggaaacataggatgagggagatgagttcgttgggaatgaaaaccggcggcaatgccgtgttggattgaagatgttgct |
418 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
33575366 |
tgcatgatggttttcacgctgaggaaacataggattagggagatgagttcgttgggaatgaacaccggcggcaatggcgtgttggattgaagatgttgct |
33575267 |
T |
|
| Q |
419 |
tcttaatcggagggatatcctccattggaacagtgaagacgttgaagttgaaaacgtgaaaccctaacac |
488 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
33575266 |
tcttaatcggagggatatcctccattggagcagtgaagacgttgaagttgaaaacgtgaaaccctaacac |
33575197 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 226 - 353
Target Start/End: Complemental strand, 5978301 - 5978174
Alignment:
| Q |
226 |
aagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtga |
325 |
Q |
| |
|
|||||| | ||||||||||| ||||| ||||| | || | |||||||||||| |||||||||||||||||||| ||| | |||||| ||||| | | || |
|
|
| T |
5978301 |
aagtgagggttttgtgatgacttcttaaggtgcatttcggtgaaagttggattggagatgagagtgttccatgacttgttcacgcacttgaatcgtgcga |
5978202 |
T |
|
| Q |
326 |
tggttttcacgctgaggaaacataggat |
353 |
Q |
| |
|
||||||||||||| ||||| ||||||| |
|
|
| T |
5978201 |
tggttttcacgctaaggaacgataggat |
5978174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 33568147 - 33568044
Alignment:
| Q |
235 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtgatggttttca |
334 |
Q |
| |
|
|||||||| || ||||| | ||| | ||||| ||||||||||| |||||||| | |||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
33568147 |
ttttgtgacgacttcttaaagtgcattttgacaaaagttggatcggagatgagcgagttccatgatttgcttacgcacttgaattgtgtgatggtcttca |
33568048 |
T |
|
| Q |
335 |
cgct |
338 |
Q |
| |
|
|||| |
|
|
| T |
33568047 |
cgct |
33568044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 235 - 302
Target Start/End: Original strand, 34862655 - 34862722
Alignment:
| Q |
235 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgattt |
302 |
Q |
| |
|
||||||||||||| |||||||||| ||||||||||| |||| | |||||||||||||||||||| |
|
|
| T |
34862655 |
ttttgtgatgattggttgaggtgaattttgatgaaagatggagaggttatgagagtgttccatgattt |
34862722 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 63; Significance: 4e-27; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 226 - 438
Target Start/End: Complemental strand, 36339389 - 36339180
Alignment:
| Q |
226 |
aagtgatgattttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtga |
325 |
Q |
| |
|
|||||| | |||||||| |||||||| ||||| | |||||||||||||||||| |||||||||||||||||||| ||||| || ||| ||||| || | |
|
|
| T |
36339389 |
aagtgagggttttgtgaagatttcttaaggtgcattttgatgaaagttggatctgagatgagagtgttccatgacttgctcacacacttgaatcgcacaa |
36339290 |
T |
|
| Q |
326 |
tggttttcacgctgaggaaacataggatgagggagatgagttcgttgggaatgaaaaccggcggcaatgccgtgttggattgaagatgttgcttcttaat |
425 |
Q |
| |
|
||||||||||||| || || ||||||| || |||||||||| ||||||| | |||||| |||||| || ||| || ||| || || |||||||| |
|
|
| T |
36339289 |
tggttttcacgctaagtaacaataggatttcggcgatgagttcgcggggaatgcacaccggcagcaatggcgcgttcgactgacgacgt---ttcttaat |
36339193 |
T |
|
| Q |
426 |
cggagggatatcc |
438 |
Q |
| |
|
||||||||||||| |
|
|
| T |
36339192 |
cggagggatatcc |
36339180 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0707 (Bit Score: 48; Significance: 3e-18; HSPs: 1)
Name: scaffold0707
Description:
Target: scaffold0707; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 235 - 338
Target Start/End: Complemental strand, 4541 - 4438
Alignment:
| Q |
235 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtgatggttttca |
334 |
Q |
| |
|
|||||||| || ||||| | ||| | ||||| ||||||||||| |||||||| | |||||||||||||||||||||| ||||||| |||||||| |||| |
|
|
| T |
4541 |
ttttgtgacgacttcttaaagtgcattttgacaaaagttggatcggagatgagcgagttccatgatttgcttacgcacttgaattgtgtgatggtcttca |
4442 |
T |
|
| Q |
335 |
cgct |
338 |
Q |
| |
|
|||| |
|
|
| T |
4441 |
cgct |
4438 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 261 - 304
Target Start/End: Complemental strand, 553823 - 553780
Alignment:
| Q |
261 |
tttgatgaaagttggatcagagatgagagtgttccatgatttgc |
304 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
553823 |
tttgatgaaagttggatcagagatgagggtgttccatgatttgc |
553780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 271 - 337
Target Start/End: Complemental strand, 26236075 - 26236009
Alignment:
| Q |
271 |
gttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtgatggttttcacgc |
337 |
Q |
| |
|
|||||||||||||||||||||||||| || ||||| ||||| ||||| |||||| |||||| |||| |
|
|
| T |
26236075 |
gttggatcagagatgagagtgttccaggacttgctcacgcatttgaatcgcgtgagggttttaacgc |
26236009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 310
Target Start/End: Complemental strand, 26236796 - 26236754
Alignment:
| Q |
268 |
aaagttggatcagagatgagagtgttccatgatttgcttacgc |
310 |
Q |
| |
|
||||||||||||||||||| ||||||||| |||||||| |||| |
|
|
| T |
26236796 |
aaagttggatcagagatgaaagtgttccaggatttgctcacgc |
26236754 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0649 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0649
Description:
Target: scaffold0649; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 305
Target Start/End: Complemental strand, 4727 - 4657
Alignment:
| Q |
235 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgct |
305 |
Q |
| |
|
||||||||||||||||||||||| | || || ||| | ||||| |||||||| | ||||||||||||||| |
|
|
| T |
4727 |
ttttgtgatgatttcttgaggtgcatttggacgaagatgggatcggagatgagtgagttccatgatttgct |
4657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 235 - 333
Target Start/End: Complemental strand, 23086005 - 23085907
Alignment:
| Q |
235 |
ttttgtgatgatttcttgaggtgaaatttgatgaaagttggatcagagatgagagtgttccatgatttgcttacgcacctgaattgcgtgatggttttc |
333 |
Q |
| |
|
||||||||||| ||||| || ||| || ||||| ||||||| |||| ||||||||||||||| ||||||||||| ||||| ||| ||| |||||| |
|
|
| T |
23086005 |
ttttgtgatgacttcttaagatgattctttatgaagattggatcggagacgagagtgttccatgacttgcttacgcatttgaatagcgcgattgttttc |
23085907 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University