View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_high_4 (Length: 418)
Name: NF8929_high_4
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 16 - 223
Target Start/End: Original strand, 40219421 - 40219628
Alignment:
| Q |
16 |
attctcacatcagcttaattgcattgtctttaaaaactaaattgaatccgatagttcaacaagttccataacgaattcaactgcggtttcatctcaaatt |
115 |
Q |
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| T |
40219421 |
attctcacatcagcttaattgcattgtctttaaaaactaaattgaatccgatagttcaacaagttccataacgaattcaactgcgattttatctcaaatt |
40219520 |
T |
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| Q |
116 |
ttaaacagtccaagcatagctccataggtctttcagtttggtgtcggttctaattttaaagaattaccacaatgcaaaatatcaacctaattgaactgtt |
215 |
Q |
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| T |
40219521 |
ttaaacagtccaagcatagctccataggtctttcggtttggtgtcggttctaattttaaagaattaccacaatgcaaaatatcaacctaattgaactgtt |
40219620 |
T |
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| Q |
216 |
aaaagctg |
223 |
Q |
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|||||||| |
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| T |
40219621 |
aaaagctg |
40219628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 264 - 416
Target Start/End: Original strand, 40219609 - 40219762
Alignment:
| Q |
264 |
aattgaactgttaaaagctgctgtatcaggaaa-tctattttcgaataaaaaactatgagagcataaattcggctaactagggcaatgaataatgatatg |
362 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40219609 |
aattgaactgttaaaagctgctgtatcaggaaaatctattttcgaataaaaaactatgagagcataaattcggctaactagggcaatgaataatgatatg |
40219708 |
T |
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| Q |
363 |
ctcactatgtcaacaactcccaaacgcaaaaccaaattaacaattttataacac |
416 |
Q |
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| T |
40219709 |
ctcactatgtcaacaactcccaaacgcaaaaccaaattaacaattttataacac |
40219762 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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