View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_high_5 (Length: 403)
Name: NF8929_high_5
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_high_5 |
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Alignment Details
Target: chr5 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 3652146 - 3652530
Alignment:
| Q |
1 |
tgagaaataatcctcatgactaccatagtggattgaagagctgaagtaggtgggttccactgtctcattctgataattggtactgttagtattcttgtta |
100 |
Q |
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| T |
3652146 |
tgagaaataatcctcacaaccaccatagtggattgaagagctgaagtaggtgggttccaccgtctcattctgataatcggtactattagtattcttgtta |
3652245 |
T |
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| Q |
101 |
gagatgtcactattaggagttcctaaaacaaatccaaacagaaacattacttaagaaataaatacatgtttaaagtggttttaagccatatatacttcta |
200 |
Q |
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| T |
3652246 |
gagatgtcactattaggagttcctaaaacaaatccaaacagaaacattacttaagaaatacatacatgtttaaagtggttttaagccatatatacttcat |
3652345 |
T |
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| Q |
201 |
atgggtacacaatatttgaaatttatgtgccgaattgaagagatatagtttgcagttagtttgtcacgtaatcaagtcaaagtaattatattattgatat |
300 |
Q |
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| T |
3652346 |
atgggtacacaatatttgaaatttatgtgccgaatcgaagagatatagtttgcagttagtttgtcatgtaatcaagtcaaagtaattatattattgatat |
3652445 |
T |
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| Q |
301 |
agatagacgaggagaaacttcttaacaaattacctggtgctccaagacttttgcttcctacttcttcagttcttgatcctttccc |
385 |
Q |
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| T |
3652446 |
agatagacgaggagaaacttcttaacaaattacctggtgcttcaagacttttgcttcctacttcttcagttcttgatcctttccc |
3652530 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 17 - 151
Target Start/End: Complemental strand, 34851412 - 34851275
Alignment:
| Q |
17 |
tgactaccatagtggattgaagagctgaagtaggtgggttccactgtctcattctgataattggtactgttagtattcttgttagagatg---tcactat |
113 |
Q |
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| T |
34851412 |
tgaccaccatagtagattgaagagctgtagtagctaggttccattgtctcattctgataattggtacaagtatttttgttataagagatgccatcactag |
34851313 |
T |
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| Q |
114 |
taggagttcctaaaacaaatccaaacagaaacattact |
151 |
Q |
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| T |
34851312 |
gagtagtgcctaaaacgaatccaaacataaacattact |
34851275 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 328 - 385
Target Start/End: Complemental strand, 34851195 - 34851138
Alignment:
| Q |
328 |
aattacctggtgctccaagacttttgcttcctacttcttcagttcttgatcctttccc |
385 |
Q |
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| T |
34851195 |
aattacctgttgctccaagatttttgcttcccacttcttgagttcttgatcctctccc |
34851138 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 327 - 379
Target Start/End: Complemental strand, 3511183 - 3511131
Alignment:
| Q |
327 |
aaattacctggtgctccaagacttttgcttcctacttcttcagttcttgatcc |
379 |
Q |
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||||||||||||| |||||||||||| |||| ||||||| | |||||||||| |
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| T |
3511183 |
aaattacctggtgttccaagacttttttttcccacttcttgaattcttgatcc |
3511131 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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