View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_high_8 (Length: 279)
Name: NF8929_high_8
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_high_8 |
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Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 1 - 262
Target Start/End: Original strand, 41160527 - 41160785
Alignment:
| Q |
1 |
tgaacgctgacaaaactaacattttacacagtcggctttagtagaagtaagataagaactagatatgaaggtaattaagttagtatcgaatggtgaaacg |
100 |
Q |
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| T |
41160527 |
tgaacgctgacaaaactaacattttacacagtcagctttagtagaagtaagataagaactagatatgaaggtaa----gttagtatcgaatggtgaaacg |
41160622 |
T |
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| Q |
101 |
acgatctctaagtttgagttcaacgataacaagctgatttgttgttctcacaggagttccacatagttcatttcattactcaagcatcttatatttaact |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41160623 |
acgatctctaagtttgagttcaacgataacaagctgatt-gttgttctcacaggagttccacatagttcatttcattactcaagcatcttatatttaact |
41160721 |
T |
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| Q |
201 |
tggtagtttttatagtag--aaaaattctcttgaaaagcaaaaatttgttcacaattttattac |
262 |
Q |
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|||||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
41160722 |
tggtagtttttatagtagaaaaaaatcctcttgaaaagcaaaaatttgttcacaattttattac |
41160785 |
T |
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