View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_10 (Length: 592)

Name: NF8929_low_10
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_10
NF8929_low_10
[»] chr2 (15 HSPs)
chr2 (18-581)||(17275704-17276267)
chr2 (23-144)||(11476551-11476665)
chr2 (162-282)||(30732026-30732146)
chr2 (162-326)||(43850067-43850231)
chr2 (162-341)||(19232310-19232488)
chr2 (162-260)||(2841008-2841106)
chr2 (162-339)||(9026804-9026981)
chr2 (439-535)||(11476745-11476841)
chr2 (162-341)||(30734006-30734185)
chr2 (162-323)||(8973330-8973492)
chr2 (162-261)||(32918098-32918197)
chr2 (162-327)||(9020865-9021031)
chr2 (208-323)||(8912998-8913115)
chr2 (162-341)||(9008039-9008218)
chr2 (162-257)||(8992166-8992262)
[»] chr8 (7 HSPs)
chr8 (162-341)||(40054330-40054509)
chr8 (162-340)||(41841064-41841241)
chr8 (162-341)||(44879001-44879179)
chr8 (162-341)||(44880742-44880920)
chr8 (154-282)||(10944368-10944497)
chr8 (162-341)||(37679773-37679951)
chr8 (162-243)||(37682075-37682156)
[»] chr6 (6 HSPs)
chr6 (162-323)||(10795818-10795979)
chr6 (162-323)||(10791580-10791741)
chr6 (183-261)||(11333269-11333347)
chr6 (154-341)||(30521251-30521439)
chr6 (484-532)||(31602712-31602760)
chr6 (162-244)||(8875707-8875789)
[»] chr1 (19 HSPs)
chr1 (162-341)||(38175440-38175619)
chr1 (162-290)||(14708596-14708724)
chr1 (162-282)||(14716309-14716429)
chr1 (162-282)||(14654309-14654429)
chr1 (162-282)||(14664100-14664220)
chr1 (162-282)||(14669678-14669798)
chr1 (162-282)||(14683768-14683888)
chr1 (162-282)||(14706106-14706226)
chr1 (162-322)||(33988088-33988248)
chr1 (162-300)||(14681617-14681755)
chr1 (168-326)||(11872405-11872564)
chr1 (162-300)||(14674499-14674637)
chr1 (162-282)||(14652543-14652663)
chr1 (162-282)||(14662334-14662454)
chr1 (162-261)||(14679877-14679976)
chr1 (162-323)||(28366126-28366288)
chr1 (162-238)||(14676650-14676726)
chr1 (162-261)||(14667101-14667200)
chr1 (162-229)||(37422187-37422254)
[»] chr4 (11 HSPs)
chr4 (162-341)||(3461053-3461231)
chr4 (162-341)||(11652303-11652481)
chr4 (162-299)||(50077151-50077288)
chr4 (162-261)||(49106519-49106618)
chr4 (175-341)||(21503709-21503874)
chr4 (162-261)||(49108623-49108722)
chr4 (162-262)||(26998729-26998829)
chr4 (162-250)||(26984668-26984756)
chr4 (18-82)||(52454513-52454577)
chr4 (165-250)||(51578268-51578352)
chr4 (210-251)||(54677592-54677633)
[»] chr5 (4 HSPs)
chr5 (162-323)||(7524986-7525147)
chr5 (162-341)||(3643658-3643836)
chr5 (162-261)||(1716441-1716541)
chr5 (162-262)||(4103263-4103363)
[»] chr7 (2 HSPs)
chr7 (210-323)||(27134577-27134690)
chr7 (162-262)||(8128161-8128260)


Alignment Details
Target: chr2 (Bit Score: 459; Significance: 0; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 459; E-Value: 0
Query Start/End: Original strand, 18 - 581
Target Start/End: Original strand, 17275704 - 17276267
Alignment:
Q  18 aaacctttcgttatggtcctcaaattactagtgttcatcaattggatgttgttactggtatgtattatgcacattttcttctccatctaaattcattctt 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17275704 aaacctttcgttatggtcctcaaattactagtgttcatcaattggatgttgttactggtatgtattatgcacattttcttctccatctaaattcattctt 17275803  T
Q  118 ttgttttctaatcaatgttcaatttttatgttggtctctcgacctttggttaagat-aaagtgtagtatatgttcgtgtcagttcaatctctaatatgtg 216  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||| |||| | |||||||||||| |||||||||    
T  17275804 ttgttttctaatcaatgttcaatttttatgttggtctctcgacttttggttaagataaaagtgtagtatacgttcttatcagttcaatctttaatatgtg 17275903  T
Q  217 gtccaatggatcacacgatattgaattacatttttgagggggagagaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacact 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||| |||| |||||||||||||||    
T  17275904 gtccaatggatcacacgatattgaattacatttttgagggggagagatcactttgatagcttgttattgggcttatcagttgtcacatatgcgttacact 17276003  T
Q  317 attgcataggtctggcacaccccacnnnnnnnnnncttggaattctcattttgatatttgtagtttttcttgttataaccaaaaaagtttatttatcata 416  Q
    ||||||||||||||||||||||||           ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  17276004 attgcataggtctggcacacccca-aaaaaaaaaacttggaattctcattttgatatttgtagtttttcttgttataatcaaaaaagtttatttatcata 17276102  T
Q  417 gtacaacgggtacatcaacccttacaagagcaatcttgacttaattgcgtagtgagaaaactctacgcatcttctatgaaaggttgcaaaacttctacta 516  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||| |||||||||||||||||||||     
T  17276103 gtacaacgggtacatcaacccttacaagagcaatcttgacttaattgtgtagtgagaaaactctctgcatcttctataaaaggttgcaaaacttctactg 17276202  T
Q  517 aatcatgtgctcgaaagccggggaaaaaacaaaacaccaaaacttttacataatgttttctttct 581  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17276203 aatcatgtgctcgaaagccggggaaaaaacaaaacaccaaaacttttacataatgttttctttct 17276267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 23 - 144
Target Start/End: Original strand, 11476551 - 11476665
Alignment:
Q  23 tttcgttatggtcctcaaattactagtgttcatcaattggatgttgttactggtatgtattatgcacattttcttctccatctaaattcattcttttgtt 122  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||| |       || ||||||||||||||||||||||||||||| |||| ||    
T  11476551 tttcgttatggtcctcaaattactagtgttcatcaattggacgttgttactcg-------taagcacattttcttctccatctaaattcattattttatt 11476643  T
Q  123 ttctaatcaatgttcaattttt 144  Q
    ||| ||||||||||||||||||    
T  11476644 ttccaatcaatgttcaattttt 11476665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 30732026 - 30732146
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| |||||||||||| ||||||| |||||||||||| |||||| |||||||||||| ||    
T  30732026 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgaggggggga 30732125  T
Q  262 gaccactttgatagcttgcta 282  Q
    | |||||||| ||||||||||    
T  30732126 ggccactttggtagcttgcta 30732146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 162 - 326
Target Start/End: Original strand, 43850067 - 43850231
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||  ||||| |||||| ||| || |||||||||||||||    
T  43850067 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgagtcacatgatattaaatcacttttttgagggggaga 43850166  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcatagg 326  Q
    |  |||||  ||||||||||||||| ||| | | ||||||| |||||||| ||||||||||||||    
T  43850167 ggtcacttcaatagcttgctattggacttctaatgtgtcgcctatgcgttgcactattgcatagg 43850231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 19232488 - 19232310
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||| ||| ||||| | |||||| |||  || |||||||  ||| ||| |||||| ||||| |||||| |||||||||||||||    
T  19232488 tttggctaagatcaagtgtaatatctgttcttatcagtttaata-ctgatatgtgacccattgggtcacacaatattaaattacctttttgagggggaga 19232390  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
      ||||||  ||||||||||||||||||| ||| ||||| | |||||||| |||||||||||| |  |||| ||||||||    
T  19232389 agccacttcaatagcttgctattgggcttctcaagtgtcacttatgcgttgcactattgcataagcttggcgcaccccac 19232310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 162 - 260
Target Start/End: Complemental strand, 2841106 - 2841008
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||| ||||||||||||||||||| |||||| ||||||||||||||    
T  2841106 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggttcaatggatcacacgatattaaattacttttttgagggggag 2841008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 162 - 339
Target Start/End: Original strand, 9026804 - 9026981
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacga-tattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||  |||| ||||||| |||||  | |||| |||||| |||||||| |||||    
T  9026804 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcacaacagtattaaattacttttttgagtgggag 9026903  T
Q  261 agaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacacccc 339  Q
    |||||| ||  |||||||||||||||| || ||| ||||||| ||||| || ||||||||||| || ||||||||||||    
T  9026904 agaccatttcaatagcttgctattgggtttctcaagtgtcgcctatgctttgcactattgcattgg-ctggcacacccc 9026981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 439 - 535
Target Start/End: Original strand, 11476745 - 11476841
Alignment:
Q  439 tacaagagcaatcttgacttaattgcgtagtgagaaaactctacgcatcttctatgaaaggttgcaaaacttctactaaatcatgtgctcgaaagcc 535  Q
    |||||| |||||| | || ||||||| |||||| ||||||||||||| ||||||| ||||||||||||||||| |||||||||||| ||| ||||||    
T  11476745 tacaagtgcaatcctaacgtaattgcatagtgaaaaaactctacgcaccttctataaaaggttgcaaaacttccactaaatcatgtactcaaaagcc 11476841  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 30734006 - 30734185
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| ||||| |||||| |||||| ||||| |||||||||    
T  30734006 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattactttttttagggggaga 30734105  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
      ||| |||  |||||||||| | ||||| ||  |||||||   |||||| ||||||||||| ||  |||| ||||||||    
T  30734106 agccattttagtagcttgctactaggcttctcgagtgtcgccagtgcgttgcactattgcattggcttggcgcaccccac 30734185  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 162 - 323
Target Start/End: Original strand, 8973330 - 8973492
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcaca-cgatattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | | |||| ||| ||| ||  |||| ||||||| ||||| | ||||| |||||| ||||| ||||||||    
T  8973330 tttggctaagatcaagtgtagtatctgttcttattagtttaatatctgattagtggcccaatgggtcacaacaatattaaattacttttttaagggggag 8973429  T
Q  261 agaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcat 323  Q
    |||||| ||  |||||||||| ||||| || ||| |||| ||||||||||| |||||||||||    
T  8973430 agaccatttcaatagcttgctgttgggtttctcaagtgttgcatatgcgttgcactattgcat 8973492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 32918098 - 32918197
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| |||||| |||||||||||||||    
T  32918098 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggaga 32918197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 162 - 327
Target Start/End: Original strand, 9020865 - 9021031
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcac-acgatattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | ||| || ||| ||| | |||||| ||||||| |||| ||  |||| |||||| |||||||||| |||    
T  9020865 tttggctaagatcaagtgtagtatctgttcttatcaatttaatatctgagatgtggcccaatgggtcactacagtattaaattacttttttgagggtgag 9020964  T
Q  261 agaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggt 327  Q
    || ||| ||  ||| ||||||||||||||| ||| ||||| | |||| ||| |||||||||||||||    
T  9020965 aggccatttcaataacttgctattgggcttctcaagtgtcacctatgtgttgcactattgcataggt 9021031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 208 - 323
Target Start/End: Original strand, 8912998 - 8913115
Alignment:
Q  208 taatatgtggtccaatggatcacac--gatattgaattacatttttgagggggagagaccactttgatagcttgctattgggcttatcaggtgtcgcata 305  Q
    ||||||||||||||||| |||||||  |||||| |||||| |||||||||||||||||||| ||   ||||||||||||||  |  |||  |||||| ||    
T  8912998 taatatgtggtccaatgaatcacacatgatattaaattacttttttgagggggagagaccatttcagtagcttgctattggtttcctcatttgtcgccta 8913097  T
Q  306 tgcgttacactattgcat 323  Q
    ||| || |||||||||||    
T  8913098 tgcattgcactattgcat 8913115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 9008039 - 9008218
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacga-tattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||  |||| ||||||| ||| |  | |||| |||||| ||||||||||||||    
T  9008039 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgattagtggcccaatgggtcataacagtattaaattacttttttgagggggag 9008138  T
Q  261 agaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
    || ||| ||  ||| |||| ||||||| || ||| ||||||| ||||| || |||||||||||  | ||||||||||||||    
T  9008139 aggccatttcaataacttgttattgggtttctcaagtgtcgcctatgctttgcactattgcattcg-ctggcacaccccac 9008218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 162 - 257
Target Start/End: Original strand, 8992166 - 8992262
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcac-acgatattgaattacatttttgagggg 257  Q
    ||||| |||||| ||||||||||||||||| | | |||||||| ||| ||  |||| ||||||| |||| |  ||||| |||||| |||||||||||    
T  8992166 tttggctaagatcaagtgtagtatatgttcttatgagttcaatatctgattagtggcccaatgggtcacaataatattaaattacttttttgagggg 8992262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 76; Significance: 7e-35; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 76; E-Value: 7e-35
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 40054330 - 40054509
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| ||| |||||||| |||||| |||||||||||||||    
T  40054330 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcatacgatattaaattacttttttgagggggaga 40054429  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
    | ||||||  ||||||||||||||||||| | | ||||||| |||| ||| |||||||||||| |  |||| ||||||||    
T  40054430 ggccacttcaatagcttgctattgggcttcttaagtgtcgcttatgtgttgcactattgcataagcttggcgcaccccac 40054509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 162 - 340
Target Start/End: Complemental strand, 41841241 - 41841064
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||||||||||| |||||||||||| |||||| ||||||| |||||||    
T  41841241 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatgggtcacacgatattaaattacttttttgatggggaga 41841142  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacacccca 340  Q
      ||||    ||||||||||||||||||| ||  ||||||| |||| ||| ||||||||||| || ||||| |||||||    
T  41841141 agccaccccaatagcttgctattgggcttctcgagtgtcgcctatgtgttgcactattgcat-gggctggcgcacccca 41841064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 44879001 - 44879179
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||  |||||| ||||| |||||| |||||| |||||||||||||||    
T  44879001 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgagggggaga 44879100  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
       ||     ||||||||||||||  ||| |   ||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  44879101 agtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcatagg-ctggcgcaccccac 44879179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 44880920 - 44880742
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||  |||||| ||||| |||||| |||||| |||||||||||||||    
T  44880920 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgggtcacatgatattaaattacttttttgagggggaga 44880821  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
       ||     ||||||||||||||  ||| |   ||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  44880820 agtcatcacaatagcttgctattgaacttcttgagtgtcgcttatgcgttgcactattgcatagg-ctggcgcaccccac 44880742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 154 - 282
Target Start/End: Complemental strand, 10944497 - 10944368
Alignment:
Q  154 tctcgaccttt-ggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttg 252  Q
    ||||||||||| || |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| | ||||| |||||||||||| |||||| ||||||    
T  10944497 tctcgaccttttggctaagatcaagtgtagtatctgttcttatcagtttaatatcttatatgtggacaaatggttcacacgatattaaattacttttttg 10944398  T
Q  253 agggggagagaccactttgatagcttgcta 282  Q
    | |||||||  ||| |||  ||||||||||    
T  10944397 atggggagaagccattttagtagcttgcta 10944368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 37679773 - 37679951
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  |||  |||||| ||||   || ||||||||||||    
T  37679773 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacttgatattaaatttatttattgagggggaga 37679872  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
    | ||||   | |||||||||||||||| | ||  ||||||| | || ||| |||||| |||  |||||||| ||||||||    
T  37679873 ggccaccacggtagcttgctattgggcctctc-tgtgtcgcctttgtgttgcactatagcaatggtctggcgcaccccac 37679951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 162 - 243
Target Start/End: Original strand, 37682075 - 37682156
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaatt 243  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| ||||    
T  37682075 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgggccaatggtccacacgatattaaatt 37682156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 70; Significance: 3e-31; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 162 - 323
Target Start/End: Complemental strand, 10795979 - 10795818
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||  ||||||| |||||||||||| |||||| |||||||||||||||    
T  10795979 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgacccaatgggtcacacgatattaaattacttttttgagggggaga 10795880  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcat 323  Q
      ||||||  ||||||||||||| ||||| ||| ||||||| | |||||| |||||||||||    
T  10795879 agccacttcaatagcttgctattaggcttctcatgtgtcgcttgtgcgttgcactattgcat 10795818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 162 - 323
Target Start/End: Complemental strand, 10791741 - 10791580
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||| |||||||| ||||| |||||| |||||| |||||||||||||||    
T  10791741 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatgggtcacatgatattaaattacttttttgagggggaga 10791642  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcat 323  Q
      ||||||  ||||||||||||| ||||| ||| |||||||   |||||| |||||||||||    
T  10791641 agccacttcaatagcttgctattaggcttctcatgtgtcgctcgtgcgttgcactattgcat 10791580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 183 - 261
Target Start/End: Original strand, 11333269 - 11333347
Alignment:
Q  183 tatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||||||| | |||||| ||| ||| ||||||||||||| ||||||||||||||| |||||| |||||||||||||||    
T  11333269 tatatgttcttatcagtttaatatctgatatgtggtccaacggatcacacgatattaaattacttttttgagggggaga 11333347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 154 - 341
Target Start/End: Original strand, 30521251 - 30521439
Alignment:
Q  154 tctcgaccttt-ggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttg 252  Q
    ||||||||||| || | |||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||  |  |||||||||||| ||||   ||||||    
T  30521251 tctcgaccttttggctgagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccatcgcctcacacgatattcaatttattttttg 30521350  T
Q  253 agggggagagaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
    |||||||||| |||||   ||||||||||||||||  | ||| ||||||  | ||| || ||||||||||| || ||||| ||||||||    
T  30521351 agggggagagtccactactatagcttgctattgggtctctcaagtgtcgtctttgctttgcactattgcattggcctggcgcaccccac 30521439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 484 - 532
Target Start/End: Original strand, 31602712 - 31602760
Alignment:
Q  484 catcttctatgaaaggttgcaaaacttctactaaatcatgtgctcgaaa 532  Q
    ||||||||||||||||||||| | |||| ||||||||||| ||||||||    
T  31602712 catcttctatgaaaggttgcagagcttccactaaatcatgggctcgaaa 31602760  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 244
Target Start/End: Original strand, 8875707 - 8875789
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaatta 244  Q
    ||||| |||||| ||||||| ||| ||||| | ||| || ||| ||| |||||||||||||| ||| |||||||||| |||||    
T  8875707 tttggctaagatcaagtgtaatatctgttcttatcaatttaatatctgatatgtggtccaatagattacacgatattaaatta 8875789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 68; Significance: 4e-30; HSPs: 19)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 38175619 - 38175440
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||| |||||||| |||||||||||| |||||| |||||||||||||||    
T  38175619 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatgggtcacacgatattaaattacttttttgagggggaga 38175520  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
     ||||| |   |||||||||  |||| |||||| ||||||| |||| ||| ||||||| |||| | ||||| ||||||||    
T  38175519 aaccacctcagtagcttgctgctgggtttatcatgtgtcgcttatgtgttgcactattacataagcctggcgcaccccac 38175440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 162 - 290
Target Start/End: Original strand, 14708596 - 14708724
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14708596 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14708695  T
Q  262 gaccactttgatagcttgctattgggctt 290  Q
    |  ||||||  |||||||||||| |||||    
T  14708696 ggtcactttagtagcttgctattaggctt 14708724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 14716309 - 14716429
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| |||||||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14716309 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctaatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14716408  T
Q  262 gaccactttgatagcttgcta 282  Q
    | | |||||  ||||||||||    
T  14716409 ggcaactttagtagcttgcta 14716429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 14654429 - 14654309
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14654429 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14654330  T
Q  262 gaccactttgatagcttgcta 282  Q
    | ||||||   ||||||||||    
T  14654329 ggccacttcagtagcttgcta 14654309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 14664220 - 14664100
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14664220 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14664121  T
Q  262 gaccactttgatagcttgcta 282  Q
    | ||||||   ||||||||||    
T  14664120 ggccacttcagtagcttgcta 14664100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 282
Target Start/End: Complemental strand, 14669798 - 14669678
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14669798 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14669699  T
Q  262 gaccactttgatagcttgcta 282  Q
    | | |||||  ||||||||||    
T  14669698 ggcaactttagtagcttgcta 14669678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 14683768 - 14683888
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14683768 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14683867  T
Q  262 gaccactttgatagcttgcta 282  Q
    | | |||||  ||||||||||    
T  14683868 ggcaactttagtagcttgcta 14683888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 14706106 - 14706226
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14706106 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14706205  T
Q  262 gaccactttgatagcttgcta 282  Q
    | | |||||  ||||||||||    
T  14706206 ggcaactttagtagcttgcta 14706226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 162 - 322
Target Start/End: Original strand, 33988088 - 33988248
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||  |||||  |||||||||||| |||||| ||||| |||||||||    
T  33988088 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaatgagtcacacgatattaaattacttttttaagggggaga 33988187  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgca 322  Q
    | ||| ||  |||||||||||||||| || ||| ||||||| |||||  | ||||||||||    
T  33988188 ggccatttcaatagcttgctattgggtttttcaagtgtcgcttatgctctgcactattgca 33988248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 14681617 - 14681755
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||| |||||||||||||||    
T  14681617 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatattaaattacttttttgagggggaga 14681716  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtc 300  Q
      ||| |||  |||||||||| | ||||| || ||||||    
T  14681717 agccattttagtagcttgctactaggcttctcgggtgtc 14681755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 168 - 326
Target Start/End: Complemental strand, 11872564 - 11872405
Alignment:
Q  168 taagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttga-gggggagagacca 266  Q
    |||||| ||||||| ||| ||||| | |||||| ||| | | ||||||||| |||||| |||||||||||| |||||| ||||| | ||||||||| |||    
T  11872564 taagatcaagtgtactatctgttcttatcagtttaatatatgatatgtggttcaatgggtcacacgatattaaattactttttttaagggggagaggcca 11872465  T
Q  267 ctttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcatagg 326  Q
     || ||||||||||||||| |||| ||| |||| || |||| ||| ||||| ||||||||    
T  11872464 tttcgatagcttgctattgagcttttcaagtgtagcttatgtgttgcactactgcatagg 11872405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 162 - 300
Target Start/End: Original strand, 14674499 - 14674637
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| ||||| |||||| |||||| |||||||||||||||    
T  14674499 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggaga 14674598  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtc 300  Q
      ||| |||  |||||||||| | ||||| || ||||||    
T  14674599 agccattttagtagcttgctactaggcttctcgggtgtc 14674637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 14652543 - 14652663
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| |||||| |||||||||||||||    
T  14652543 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggaga 14652642  T
Q  262 gaccactttgatagcttgcta 282  Q
      ||| |||  ||||||||||    
T  14652643 agccattttagtagcttgcta 14652663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 162 - 282
Target Start/End: Original strand, 14662334 - 14662454
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| |||||| |||||||||||||||    
T  14662334 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttttgagggggaga 14662433  T
Q  262 gaccactttgatagcttgcta 282  Q
      ||| |||  ||||||||||    
T  14662434 agccattttagtagcttgcta 14662454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 261
Target Start/End: Original strand, 14679877 - 14679976
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| ||||| |||||| |||||| |||||||||||||||    
T  14679877 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacatgatattaaattacttttttgagggggaga 14679976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 162 - 323
Target Start/End: Complemental strand, 28366288 - 28366126
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtcc-aatggatcacacgatattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||  || ||||| |||||||||||| |||||| ||||| ||||||||    
T  28366288 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgaccccaatgggtcacacgatattaaattacttttttaagggggag 28366189  T
Q  261 agaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcat 323  Q
    |||| | | |  |||||||||| | ||  | ||| ||||||  |||||||| |||||||||||    
T  28366188 agactattatagtagcttgctactaggtctttcatgtgtcgtttatgcgttgcactattgcat 28366126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 238
Target Start/End: Original strand, 14676650 - 14676726
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatatt 238  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| ||||||||||||    
T  14676650 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggttcacacgatatt 14676726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 14667200 - 14667101
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | | |||| ||| ||| ||| |||| ||||||| ||||| |||||| |||||| ||||  |||||||||    
T  14667200 tttggctaagatcaagtgtagtatctgttcttattagtttaatatctgatacgtggaccaatggttcacatgatattaaattactttttctagggggaga 14667101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 162 - 229
Target Start/End: Original strand, 37422187 - 37422254
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatca 229  Q
    ||||| |||||| |||||||| |||||||| | |||||| ||| ||| ||||||||||||| ||||||    
T  37422187 tttggctaagatcaagtgtagcatatgttcttatcagtttaatatctgatatgtggtccaacggatca 37422254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 3461231 - 3461053
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||   |||||| |||||||||||| |||||| ||||| |||||||||    
T  3461231 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttaagggggaga 3461132  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
      ||| ||  |||||||||||||||| || ||  ||||||  |||||||| |||||||||||||| ||||||||||||||    
T  3461131 agccatttcaatagcttgctattgggtttctcgagtgtcgtctatgcgttgcactattgcatagg-ctggcacaccccac 3461053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 162 - 341
Target Start/End: Complemental strand, 11652481 - 11652303
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||||| |||||||||||| |||||  |||||||||||||||    
T  11652481 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatgggtcacacgatattaaattatttttttgagggggaga 11652382  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
      |||||   ||||||||||||||||||| |   ||||||| |||| ||| ||||||||||| || ||||| ||||||||    
T  11652381 agccactccaatagcttgctattgggcttcttgagtgtcgcctatgtgttgcactattgcat-gggctggcgcaccccac 11652303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 299
Target Start/End: Complemental strand, 50077288 - 50077151
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||| |||||||| ||||| |||||| |||||| |||||||||||||||    
T  50077288 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgttccaatggttcacatgatattaaattacttttttgagggggaga 50077189  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgt 299  Q
      ||||||  ||||||||||||||||||| ||| ||||    
T  50077188 agccacttcaatagcttgctattgggcttctcatgtgt 50077151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 49106618 - 49106519
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||||||||||||||||||||||| |||||| |||||||||||||||    
T  49106618 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaatggatcacacgatattaaattacttttttgagggggaga 49106519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 175 - 341
Target Start/End: Original strand, 21503709 - 21503874
Alignment:
Q  175 aagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggagagaccactttgata 274  Q
    ||||||||||| ||||| | |||||| ||| ||| ||||||||  |||| | |||||||||||| |||||  |||||||||||||||   ||     |||    
T  21503709 aagtgtagtatctgttcttatcagtttaatatctgatatgtggctcaataggtcacacgatattaaattatttttttgagggggagaagtcatcacaata 21503808  T
Q  275 gcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
    |||||||||||  ||| ||| ||||||| |||||||| |||||||||||||| ||||| ||||||||    
T  21503809 gcttgctattgaacttctcaagtgtcgcttatgcgttgcactattgcatagg-ctggcgcaccccac 21503874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 49108722 - 49108623
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||   |||||| |||||||||||| |||||| |||||||||||||||    
T  49108722 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgactcaatgggtcacacgatattaaattacttttttgagggggaga 49108623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 162 - 262
Target Start/End: Complemental strand, 26998829 - 26998729
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| |||||| ||||| |||| ||||    
T  26998829 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattactttttttagggagaga 26998730  T
Q  262 g 262  Q
    |    
T  26998729 g 26998729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 250
Target Start/End: Complemental strand, 26984756 - 26984668
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttt 250  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| |||||||  ||||||||||| |||||| ||||    
T  26984756 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggaccaatggtccacacgatattaaattacttttt 26984668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 18 - 82
Target Start/End: Complemental strand, 52454577 - 52454513
Alignment:
Q  18 aaacctttcgttatggtcctcaaattactagtgttcatcaattggatgttgttactggtatgtat 82  Q
    ||||||| || | ||||||||||||| | | ||||||| ||||||||||||||||||||| ||||    
T  52454577 aaaccttccgatttggtcctcaaatttccaatgttcatgaattggatgttgttactggtacgtat 52454513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 165 - 250
Target Start/End: Original strand, 51578268 - 51578352
Alignment:
Q  165 ggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttt 250  Q
    ||||| ||| ||||||| ||||||||| | | |||||| | |||||||| |||| |||| |||||||||||||| |||||| ||||    
T  51578268 ggttaggatcaagtgtaatatatgttcttattagttca-tatctaatatatggttcaatagatcacacgatattaaattacttttt 51578352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 210 - 251
Target Start/End: Original strand, 54677592 - 54677633
Alignment:
Q  210 atatgtggtccaatggatcacacgatattgaattacattttt 251  Q
    |||||||||| |||||||||||||||||| |||||| |||||    
T  54677592 atatgtggtctaatggatcacacgatattaaattactttttt 54677633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 62; Significance: 2e-26; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 162 - 323
Target Start/End: Original strand, 7524986 - 7525147
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||| ||||||||||||||||||||| |||||| |||||||||||||||    
T  7524986 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtgatccaatggatcacacgatattaaattacttttttgagggggaga 7525085  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcat 323  Q
    | || | ||  |||||||||  |||| || ||| ||||||   ||||||| |||||||||||    
T  7525086 ggccgccttagtagcttgctgctgggtttctcatgtgtcgtccatgcgttgcactattgcat 7525147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 162 - 341
Target Start/End: Original strand, 3643658 - 3643836
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||| ||| |||||||||||| |||||| ||||| |||||||||    
T  3643658 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccattgggtcacacgatattaaattacttttttaagggggaga 3643757  T
Q  262 gaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcgttacactattgcataggtctggcacaccccac 341  Q
     || |     |||||||||||||||| || ||  |||| || |||| ||| ||||||||||| || ||||| ||||||||    
T  3643758 aactatcacaatagcttgctattgggtttctcgagtgttgcttatgtgttgcactattgcattgg-ctggcgcaccccac 3643836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 162 - 261
Target Start/End: Complemental strand, 1716541 - 1716441
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtcc-aatggatcacacgatattgaattacatttttgagggggag 260  Q
    ||||| |||||| ||||||||||| ||||| | |||||| ||| ||| ||||||||||| ||||| |||||||||||| |||||| ||||| ||||||||    
T  1716541 tttggctaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggtccaaatgggtcacacgatattaaattacttttttaagggggag 1716442  T
Q  261 a 261  Q
    |    
T  1716441 a 1716441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 4103263 - 4103363
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    |||||||||||| ||||||||||| ||||| | |||||| ||| ||| |||||||| ||||| |  ||||||||||| |||| | ||||| |||| ||||    
T  4103263 tttggttaagatcaagtgtagtatctgttcttatcagtttaatatctgatatgtggcccaatagtccacacgatattaaattgctttttttagggagaga 4103362  T
Q  262 g 262  Q
    |    
T  4103363 g 4103363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 210 - 323
Target Start/End: Original strand, 27134577 - 27134690
Alignment:
Q  210 atatgtggtccaatggatcacacgatattgaattacatttttgagggggagagaccactttgatagcttgctattgggcttatcaggtgtcgcatatgcg 309  Q
    |||||||||| ||||  ||| |||||||| |||||| |||||||||||||||   ||| |  |||| ||||| |||||||| ||| |||||||  |||||    
T  27134577 atatgtggtctaatgagtcaaacgatattaaattacttttttgagggggagaagacacctcaatagtttgctgttgggcttctcatgtgtcgctcatgcg 27134676  T
Q  310 ttacactattgcat 323  Q
    || |||||||||||    
T  27134677 ttgcactattgcat 27134690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 162 - 262
Target Start/End: Original strand, 8128161 - 8128260
Alignment:
Q  162 tttggttaagataaagtgtagtatatgttcgtgtcagttcaatctctaatatgtggtccaatggatcacacgatattgaattacatttttgagggggaga 261  Q
    |||||||||||| ||||||||||||||||| | | |||| ||| | | |||||||| ||||||| |||||| ||||| ||||   || ||||||||||||    
T  8128161 tttggttaagattaagtgtagtatatgttctttttagtttaatatatgatatgtgggccaatgg-tcacacaatattaaatttatttcttgagggggaga 8128259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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