View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_14 (Length: 436)
Name: NF8929_low_14
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_14 |
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| [»] scaffold0110 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 13 - 417
Target Start/End: Original strand, 26559122 - 26559532
Alignment:
| Q |
13 |
tggtgttgtgtttgacagggaaacagatctaaacaacatcctcagagtcaataaattggtcttcaatagaacatctagaaatcattgtgtgattttgtag |
112 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
26559122 |
tggtgttgtgtttcacagggaaacagatctaaacaacatcctcaaagtcaataaattggtcttcaatagaacatctagaaatcattgtgtgattttgtag |
26559221 |
T |
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| Q |
113 |
tgtttgccattatggctacaaaaacatatcacaagcaaataaatttgtcattgccgtgctggtttgagttgaatttgacaaacaaatctgatccattttg |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
26559222 |
tgtttgccattatggctacaaaaacatatcacaagcaaataaatttgtcattgccgtgctggtttgagttgaatttgagtaacaaatctgatccattttg |
26559321 |
T |
|
| Q |
213 |
agtaaacagtcattttgatccctaaatttgtg------tgtcacaactcacaatagtccaatcaatgaatcaaaattataaaaatatacataaatgtgtc |
306 |
Q |
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| T |
26559322 |
agcaaacagtcattttgatccctaaatttgtgtgacactgtcacaactcacaatagtccaatcaatgaatcaaaattataaaaatatacataaatgtgtc |
26559421 |
T |
|
| Q |
307 |
ttttgttggtcactttggttctcaaatttggctttcatcagttagtttggttctcaaatgtatcttccgttaattaattcggtccataaaattactaaca |
406 |
Q |
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||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||| |
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| T |
26559422 |
ttttgttggtcactttggtcctcaaatttggatttcatcagttagtttggttctcaaatgtgtcttccgttaattaatttggtccataaaattactaaca |
26559521 |
T |
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| Q |
407 |
aacgacacact |
417 |
Q |
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| T |
26559522 |
aacgacacact |
26559532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 275 - 406
Target Start/End: Original strand, 29591362 - 29591492
Alignment:
| Q |
275 |
atcaaaattataaaaatatacataaatgtgtcttttgttggtcactttggttctcaaatttggctttcatcagttagtttggttctcaaatgtatcttcc |
374 |
Q |
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|||||||||| |||| ||||||||||| ||||| ||||||||||||||| || |||| | |||| || |||||||||||| |||||||||||||||| |
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| T |
29591362 |
atcaaaattaacaaaacatacataaatgcatctttcgttggtcactttggtacttaaatgcgtcttttat-agttagtttggtcctcaaatgtatcttcc |
29591460 |
T |
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| Q |
375 |
gttaattaattcggtccataaaattactaaca |
406 |
Q |
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| T |
29591461 |
gttcgtcaatttgatccataaaattactaaca |
29591492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 275 - 406
Target Start/End: Original strand, 2577104 - 2577235
Alignment:
| Q |
275 |
atcaaaattataaaaatatacataaatgtgtcttttgttggtcactttggttctcaaatttggctttcatcagttagtttggttctcaaatgtatcttcc |
374 |
Q |
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|||||| ||| |||||||| | |||||| |||||||| || | ||||| |||| ||||| |||| || |||||||||| ||||||||||||||||| |
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| T |
2577104 |
atcaaagttaaaaaaatattctcaaatgtagcttttgttagttagattggtcctcagatttgtcttttattagttagtttgattctcaaatgtatcttct |
2577203 |
T |
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| Q |
375 |
gttaattaattcggtccataaaattactaaca |
406 |
Q |
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||| | | || | |||| ||||||||||||| |
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| T |
2577204 |
attagtcagtttgatccaaaaaattactaaca |
2577235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 346 - 414
Target Start/End: Original strand, 30925707 - 30925775
Alignment:
| Q |
346 |
agttagtttggttctcaaatgtatcttccgttaattaattcggtccataaaattactaacaaacgacac |
414 |
Q |
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| T |
30925707 |
agttaatttggttcttgaatgtgtcttccgttagtcaattcggtccataaaattactaataaaagacac |
30925775 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 300 - 373
Target Start/End: Complemental strand, 40220130 - 40220057
Alignment:
| Q |
300 |
atgtgtcttttgttggtcactttggttctcaaatttggctttcatcagttagtttggttctcaaatgtatcttc |
373 |
Q |
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| T |
40220130 |
atgtgtcttttgttagtcactttggtcctaaaatgtatctttggttagttagtttggttctcgaatgtatcttc |
40220057 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0110 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: scaffold0110
Description:
Target: scaffold0110; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 363 - 418
Target Start/End: Complemental strand, 802 - 747
Alignment:
| Q |
363 |
aatgtatcttccgttaattaattcggtccataaaattactaacaaacgacacactt |
418 |
Q |
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| T |
802 |
aatgtatcttccgttagtcaatttggtccacaaaattactaacaaaagacacactt |
747 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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