View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_20 (Length: 414)
Name: NF8929_low_20
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 270; Significance: 1e-151; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 270; E-Value: 1e-151
Query Start/End: Original strand, 17 - 397
Target Start/End: Original strand, 36567008 - 36567378
Alignment:
| Q |
17 |
agtagaatatgttgtatctataactctcagctcttccaaaacatagaatcctcctatctatagcatgttcggatcaatctctcgtatgctaattacatat |
116 |
Q |
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| T |
36567008 |
agtagaatatgcagtatctataactctcagctcttccaaaacatagaatcctcctatctatagcatgttccgatcaatctctcgtatactaattacatat |
36567107 |
T |
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| Q |
117 |
ctaaatcacattgtaattctccataacaatttatttagtcaaaaataaatttttgattgtaggcctaaagcgatggttttagtggatttgcccttgagcc |
216 |
Q |
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| T |
36567108 |
ctaaatcacattgtgattctccataacaatttatttagtcaaaaataaatttttgattgtaggcctaaagcgaaggttttagtggatttgcccttg---- |
36567203 |
T |
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| Q |
217 |
agccctaaatatgattggatatatgggaaaaaggtttatggtaagtataataattaatcccatttatctaatacatatac--gtgnnnnnnncttaaggt |
314 |
Q |
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| T |
36567204 |
--------atatgattggatatatgggaaaaaggtttatggtaagtataataattaatcccatttatttaatgcatatacatgtttttttttcttaaggt |
36567295 |
T |
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| Q |
315 |
tagcaacaataaaagtgatctcacactggtgaagaactaaagttaatggtatcttgaaaggattaaagatcgggagcgggcta |
397 |
Q |
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| T |
36567296 |
tagcaacaataaaagtgatctcacactagtgaagaactaaagttaatggtatcttgaaaggattaaagatcgggagcgggcta |
36567378 |
T |
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