View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_24 (Length: 395)
Name: NF8929_low_24
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 23 - 377
Target Start/End: Original strand, 50464380 - 50464732
Alignment:
| Q |
23 |
tatcgagtatcttttttataaaaagaaaaaggtatgccaatttggctccgaatctcagggtttatatagtgttgacgtagatacttacatattattcgtt |
122 |
Q |
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| T |
50464380 |
tatcgagtatctttt-tataaaaagaaaaaggtatgtcaatttggctccgaacctcagggttcatatagtgttgacgtagatacttacatattattcgtt |
50464478 |
T |
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| Q |
123 |
aacgatgaccttacatcagcaaatagatctagatctaagtttttgtggtttgtgagttctcagctaaaaccttatcaattagatcannnnnnnaatatta |
222 |
Q |
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|||| ||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||| || |||||||||||||||||||| | ||||| |
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| T |
50464479 |
cacgacgaccttagatcagtaaatagatctggatctaagtttttgtggtttgtgagttctcaactgaaaccttatcaattagatcacttttttagtatta |
50464578 |
T |
|
| Q |
223 |
accatctgattcataaagaaaagatatcttgataatctagagttcggttcaatggtaaataacaaattcaattcatttttgagagagcttattaataatt |
322 |
Q |
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||| | |||||||||||||||||| || ||| ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||| ||| |
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| T |
50464579 |
accctatgattcataaagaaaagagattttggtaatctagagttcggttgaatggtaaataatgaattcaattcatttttgagagagcttattaacgatt |
50464678 |
T |
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| Q |
323 |
tgagtgcaatacttgattaccctactagatcaatttgaatcaactaggttagcat |
377 |
Q |
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| T |
50464679 |
tgagtgcaatacttgatta-cctactagatcaatttgaatcaactaggttagcat |
50464732 |
T |
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