View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8929_low_25 (Length: 366)

Name: NF8929_low_25
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8929_low_25
NF8929_low_25
[»] chr7 (4 HSPs)
chr7 (20-366)||(4909678-4910019)
chr7 (332-366)||(13751874-13751908)
chr7 (52-84)||(1042379-1042411)
chr7 (98-138)||(7133257-7133297)
[»] chr4 (2 HSPs)
chr4 (309-366)||(22129549-22129606)
chr4 (52-85)||(30982810-30982843)
[»] chr6 (4 HSPs)
chr6 (309-366)||(1083492-1083549)
chr6 (309-366)||(1086138-1086195)
chr6 (158-200)||(10760884-10760926)
chr6 (145-193)||(15443676-15443724)
[»] chr3 (4 HSPs)
chr3 (329-366)||(11354779-11354816)
chr3 (311-366)||(51972020-51972075)
chr3 (52-85)||(15864915-15864948)
chr3 (97-138)||(27903672-27903713)
[»] chr1 (2 HSPs)
chr1 (310-366)||(14500040-14500096)
chr1 (98-138)||(42004926-42004966)
[»] chr8 (1 HSPs)
chr8 (156-190)||(20081800-20081834)
[»] chr5 (4 HSPs)
chr5 (158-188)||(9878075-9878105)
chr5 (57-85)||(21522844-21522872)
chr5 (57-85)||(21533410-21533438)
chr5 (98-138)||(43554561-43554601)
[»] chr2 (2 HSPs)
chr2 (309-355)||(37039242-37039288)
chr2 (156-193)||(10547971-10548008)


Alignment Details
Target: chr7 (Bit Score: 302; Significance: 1e-170; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 302; E-Value: 1e-170
Query Start/End: Original strand, 20 - 366
Target Start/End: Complemental strand, 4910019 - 4909678
Alignment:
Q  20 cattatcttgggaggaagagggacgagacttgtgaaacacggacactctttggattaggcgtgtccagatgcaagcaagacacgcgtctgtgtccgacac 119  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    ||||||||||||||| |||||    
T  4910019 cattatcttgggaggaagagggacgagacttgtgaaacacggacactctttggattaggcgtgtccagatgcaag----acacgcgtctgtgtc-gacac 4909925  T
Q  120 cgacacaacacatatgattctgttgatgttatttgattaaattattattggtgtcgacgtgtcagtgtccgtgtttcataggatgaaactataaacttct 219  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  4909924 cgacacaacacatatgattctgttgatgttatttgattaaattattattggtgtcaacgtgtcagtgtccgtgtttcataggatgaaactataaacttct 4909825  T
Q  220 tttgtcagaagagagtaccataactgttgacatgtcaaagcttttcaagtccttcctctttacttgctgagagagtgttttacctccgtcctaattatag 319  Q
    ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||    
T  4909824 tttgtcagaagagagtaccataactgttgacgtgtcaaagcttttcaagtccttcctctttacttgctgaaagagtgttttacctccgttctaattatag 4909725  T
Q  320 ggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||    
T  4909724 ggtccttctgagaaaaacacgggaattaagaaagttaattgttgaat 4909678  T

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Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 332 - 366
Target Start/End: Complemental strand, 13751908 - 13751874
Alignment:
Q  332 aaaaacacgggaattaagaaagttaattgttgaat 366  Q
    ||||| |||||||||||||||||||||||||||||    
T  13751908 aaaaaaacgggaattaagaaagttaattgttgaat 13751874  T

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Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 52 - 84
Target Start/End: Original strand, 1042379 - 1042411
Alignment:
Q  52 tgaaacacggacactctttggattaggcgtgtc 84  Q
    ||||||||||||||||||||||||||| |||||    
T  1042379 tgaaacacggacactctttggattaggtgtgtc 1042411  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 7133257 - 7133297
Alignment:
Q  98 gacacgcgtctgtgtccgacaccgacacaacacatatgatt 138  Q
    |||||||||| |||||||||||||||||| ||| |||||||    
T  7133257 gacacgcgtcggtgtccgacaccgacacaccacctatgatt 7133297  T

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Target: chr4 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 22129549 - 22129606
Alignment:
Q  309 cctaattatagggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    ||||||||||||||||||  |||||||||| |||||||||||||||| ||||||||||    
T  22129549 cctaattatagggtccttttgagaaaaacatgggaattaagaaagttgattgttgaat 22129606  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Original strand, 30982810 - 30982843
Alignment:
Q  52 tgaaacacggacactctttggattaggcgtgtcc 85  Q
    |||| |||||||||||||||||||||||||||||    
T  30982810 tgaagcacggacactctttggattaggcgtgtcc 30982843  T

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Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 1083492 - 1083549
Alignment:
Q  309 cctaattatagggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    ||||||||||||||| ||  ||||||||||||| |||||| |||||| ||||||||||    
T  1083492 cctaattatagggtcattatgagaaaaacacggaaattaaaaaagttgattgttgaat 1083549  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 309 - 366
Target Start/End: Original strand, 1086138 - 1086195
Alignment:
Q  309 cctaattatagggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    ||||||||||||||| ||  ||||||||||||| |||||| |||||| ||||||||||    
T  1086138 cctaattatagggtcattatgagaaaaacacggaaattaaaaaagttgattgttgaat 1086195  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 200
Target Start/End: Original strand, 10760884 - 10760926
Alignment:
Q  158 aaattattattggtgtcgacgtgtcagtgtccgtgtttcatag 200  Q
    ||||||||||  ||||||||||||||||||||||| |||||||    
T  10760884 aaattattatcagtgtcgacgtgtcagtgtccgtgcttcatag 10760926  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 145 - 193
Target Start/End: Complemental strand, 15443724 - 15443676
Alignment:
Q  145 atgttatttgattaaattattattggtgtcgacgtgtcagtgtccgtgt 193  Q
    |||||||||  | |||||||||||| ||||||||||||||||| |||||    
T  15443724 atgttattttctcaaattattattgatgtcgacgtgtcagtgttcgtgt 15443676  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 329 - 366
Target Start/End: Complemental strand, 11354816 - 11354779
Alignment:
Q  329 gagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    ||||||||||||||||||||||||||| ||||||||||    
T  11354816 gagaaaaacacgggaattaagaaagttgattgttgaat 11354779  T

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Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 311 - 366
Target Start/End: Original strand, 51972020 - 51972075
Alignment:
Q  311 taattatagggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    |||||||| |||||||  |||||||||| || ||||||||||||| ||||||||||    
T  51972020 taattataaggtccttttgagaaaaacaaggaaattaagaaagttgattgttgaat 51972075  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 52 - 85
Target Start/End: Complemental strand, 15864948 - 15864915
Alignment:
Q  52 tgaaacacggacactctttggattaggcgtgtcc 85  Q
    |||| |||||||||||||||||||||||||||||    
T  15864948 tgaagcacggacactctttggattaggcgtgtcc 15864915  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 27903713 - 27903672
Alignment:
Q  97 agacacgcgtctgtgtccgacaccgacacaacacatatgatt 138  Q
    ||||||||||| || ||||||||||||||||||| |||||||    
T  27903713 agacacgcgtcggtatccgacaccgacacaacacttatgatt 27903672  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 310 - 366
Target Start/End: Complemental strand, 14500096 - 14500040
Alignment:
Q  310 ctaattatagggtccttccgagaaaaacacgggaattaagaaagttaattgttgaat 366  Q
    |||||||||||| ||||  ||||||||||| |||||||||| |||| ||||||||||    
T  14500096 ctaattatagggcccttttgagaaaaacactggaattaagatagttgattgttgaat 14500040  T

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Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 42004926 - 42004966
Alignment:
Q  98 gacacgcgtctgtgtccgacaccgacacaacacatatgatt 138  Q
    |||| ||||| |||||||||||||||||||||| |||||||    
T  42004926 gacatgcgtcggtgtccgacaccgacacaacacctatgatt 42004966  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20081834 - 20081800
Alignment:
Q  156 ttaaattattattggtgtcgacgtgtcagtgtccg 190  Q
    |||||||||||||||||||||||| ||||||||||    
T  20081834 ttaaattattattggtgtcgacgtatcagtgtccg 20081800  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 158 - 188
Target Start/End: Original strand, 9878075 - 9878105
Alignment:
Q  158 aaattattattggtgtcgacgtgtcagtgtc 188  Q
    |||||||||||||||||||||||||||||||    
T  9878075 aaattattattggtgtcgacgtgtcagtgtc 9878105  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 21522872 - 21522844
Alignment:
Q  57 cacggacactctttggattaggcgtgtcc 85  Q
    |||||||||||||||||||||||||||||    
T  21522872 cacggacactctttggattaggcgtgtcc 21522844  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 57 - 85
Target Start/End: Complemental strand, 21533438 - 21533410
Alignment:
Q  57 cacggacactctttggattaggcgtgtcc 85  Q
    |||||||||||||||||||||||||||||    
T  21533438 cacggacactctttggattaggcgtgtcc 21533410  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Complemental strand, 43554601 - 43554561
Alignment:
Q  98 gacacgcgtctgtgtccgacaccgacacaacacatatgatt 138  Q
    |||||||||| ||||||||||||||||| |||| |||||||    
T  43554601 gacacgcgtcggtgtccgacaccgacacgacacctatgatt 43554561  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 309 - 355
Target Start/End: Complemental strand, 37039288 - 37039242
Alignment:
Q  309 cctaattatagggtccttccgagaaaaacacgggaattaagaaagtt 355  Q
    ||||||||||||||| ||   ||||||||||||||||||||||||||    
T  37039288 cctaattatagggtcattttaagaaaaacacgggaattaagaaagtt 37039242  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 156 - 193
Target Start/End: Original strand, 10547971 - 10548008
Alignment:
Q  156 ttaaattattattggtgtcgacgtgtcagtgtccgtgt 193  Q
    |||||||||||  |||||||||||||||||||||||||    
T  10547971 ttaaattattaacggtgtcgacgtgtcagtgtccgtgt 10548008  T

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