View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8929_low_27 (Length: 352)
Name: NF8929_low_27
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_27 |
 | |
|
| [»] chr5 (1 HSPs) |
| |
|
| [»] scaffold0620 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 284; Significance: 1e-159; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 284; E-Value: 1e-159
Query Start/End: Original strand, 21 - 352
Target Start/End: Complemental strand, 37511264 - 37510933
Alignment:
| Q |
21 |
tcacaatatctatgattatgttcctctttgtattaactttttattgattaacgaaatgagttaaataagatcaaagggaggaactcaaattgatacctta |
120 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
37511264 |
tcacaatatctatgattatgttcctctttgtattaactttttattgattaacgaaatgagttaaataagattaaagggaggaactcaaattgatacctta |
37511165 |
T |
|
| Q |
121 |
caaaaggtcgagatattcaatgaaattctcattttcactagtttattaaaagatatatactacaacatgtgnnnnnnnnaacggtaaagtttattaataa |
220 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| |
|
|
| T |
37511164 |
caaaaggtcgagatattcaatgaaattctcattttcactagtttattaaaagatatatactacaagatgtgttttttttaacggtaaagtttattaataa |
37511065 |
T |
|
| Q |
221 |
tcaagtcattgcatgagacaaacataaaccaacataagaaaaacaatataataaaggatgtcgtatataagcggaacacccaaatgaaaattcatacagt |
320 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
37511064 |
tcaagtcattgcatgagacaaacataaaccaacataagaaaaacaacatagtaaaggatgtcgtatataagcggaacacccaaatgaaaattcatacact |
37510965 |
T |
|
| Q |
321 |
acataaaaacatcaataaagtcaccactcaac |
352 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |
|
|
| T |
37510964 |
acataaaaacatcaatgaagtcaccactcaac |
37510933 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 81
Target Start/End: Complemental strand, 29462829 - 29462780
Alignment:
| Q |
32 |
atgattatgttcctctttgtattaactttttattgattaacgaaatgagt |
81 |
Q |
| |
|
||||||||||||||||||||||||||| || ||||||||| ||||||||| |
|
|
| T |
29462829 |
atgattatgttcctctttgtattaactcttcattgattaatgaaatgagt |
29462780 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 268 - 317
Target Start/End: Original strand, 9371643 - 9371692
Alignment:
| Q |
268 |
ataataaaggatgtcgtatataagcggaacacccaaatgaaaattcatac |
317 |
Q |
| |
|
|||| ||||| ||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
9371643 |
ataacaaagggtgtcgtatatatgcggaacacccaaaataaaattcatac |
9371692 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0620 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0620
Description:
Target: scaffold0620; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 282 - 318
Target Start/End: Complemental strand, 6313 - 6277
Alignment:
| Q |
282 |
cgtatataagcggaacacccaaatgaaaattcataca |
318 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| |
|
|
| T |
6313 |
cgtatataggcggaacacccaaaagaaaattcataca |
6277 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University