View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_28 (Length: 332)
Name: NF8929_low_28
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_28 |
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| [»] scaffold0001 (1 HSPs) |
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Alignment Details
Target: scaffold0001 (Bit Score: 278; Significance: 1e-155; HSPs: 1)
Name: scaffold0001
Description:
Target: scaffold0001; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 328
Target Start/End: Original strand, 66828 - 67141
Alignment:
| Q |
20 |
ccaggaagagacaactcggatgttacagaagatgatctcagcttcggattcctctaaaggtgcacaacacgacgattaataatataaccaatttaggaac |
119 |
Q |
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| T |
66828 |
ccaggaagagacaactcggatgttacagaagatgatctcagcttcggattcctctaaaggtgcacaacacgacgattaataacataaccaatttaggaac |
66927 |
T |
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| Q |
120 |
ttcccatgcaaccagccaaaaaattcagaggaattggatcttccctactttattattatcaaaacctagtgctagtagtctatgcgcaattatcgta--- |
216 |
Q |
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| T |
66928 |
ttcccatgcaaccagccaaaaaattcagaggaattggatcttccctactttattattatcaaaacctagtgctagtagtctatgcgcaattatcgtatgt |
67027 |
T |
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| Q |
217 |
--tgtcatgttgctcctctgcattattatggtactgtaactgtcaagaatataacataataccttgtcaacctttgtacgtagtatatataatattcatg |
314 |
Q |
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| T |
67028 |
gttgtcatgttgctcctctgcattattatggtactgtaattgtcaagaatataacataataccttgtcaacctttgtacgtagtatatataatattcatg |
67127 |
T |
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| Q |
315 |
tcgtctctgcttct |
328 |
Q |
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|||| |||| |||| |
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| T |
67128 |
tcgtgtctgtttct |
67141 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 122; Significance: 1e-62; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 20 - 292
Target Start/End: Original strand, 52185197 - 52185488
Alignment:
| Q |
20 |
ccaggaagagacaactcggatgttacagaagatgatctcagcttcggattcctctaaaggtg---------ca--caacac--gacgatta-ataatata |
105 |
Q |
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| T |
52185197 |
ccaggaagagacaactcagatgttacagaagatgatctcagcttcggattcctctaaaggtgtcccataatcaatcaactcttgaaaattatattatata |
52185296 |
T |
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| Q |
106 |
--accaatttaggaacttcccatgcaaccagccaaaaaattcagaggaattggatcttccctactttattattatcaaaacctagtgctagtagtctatg |
203 |
Q |
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| T |
52185297 |
tgaccaatttaggaacttcccatgcaaccagccaaaaaattcagagaaa--ggatcgtccctactttattattatcaaaacctagtgctagtagtctatg |
52185394 |
T |
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| Q |
204 |
cgcaattatcgta-----tgtcatgttgctcctctgcattattatggtactgtaactgtcaagaatataacataataccttgtcaacctttgta |
292 |
Q |
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||||||||||||| |||||||||||| |||| ||||||||||||| |||| | ||| |||||||||| ||| ||||| ||||||||||| |
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| T |
52185395 |
cgcaattatcgtatgtgttgtcatgttgcttctctacattattatggtattgtagttatcatgaatataacagaatgccttgccaacctttgta |
52185488 |
T |
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