View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8929_low_3 (Length: 994)
Name: NF8929_low_3
Description: NF8929
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8929_low_3 |
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Alignment Details
Target: chr3 (Bit Score: 550; Significance: 0; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 550; E-Value: 0
Query Start/End: Original strand, 18 - 586
Target Start/End: Complemental strand, 40296682 - 40296113
Alignment:
| Q |
18 |
cttgtatctgccattgctcaggacttcaatctgatcaccagtgttgatgacaatggcatttggcaaaggttggacatcaagccattccccatctttgagc |
117 |
Q |
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| T |
40296682 |
cttgtatctgccattgctcaggacttcaatctgatcaccagtgttgatgacaatggcatttggcaaaggttggacatcaagccattccccatctttgagc |
40296583 |
T |
|
| Q |
118 |
atttgaaggccacctaccttgtcatcttggaacagtaggatgacacctcctgcatcagtatgagctcggagaccattcacaagttccggatgagggcagg |
217 |
Q |
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| T |
40296582 |
atttgaaggccacctaccttgtcatcttggaacagtaggatgacacctcctgcatcagtgtgagctcggagaccattcacaagttccggatgagggcagg |
40296483 |
T |
|
| Q |
218 |
gtgggtagtggctgaccttggtgccaaagaaagcattgtctccttctccatcattcagtgccttcttgatgtatccttttggtaagcccagattctcatc |
317 |
Q |
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| T |
40296482 |
gtgggtagtggctgaccttggtgccaaagaaagcattgtctccttctccatcattcagtgccttcttgatgtatccttttggtaagcccagattctcatc |
40296383 |
T |
|
| Q |
318 |
catcacttctgtgagactcactgccagtttctttaactcagaccgatattctgatatggtttccctgtcattcacatgagaagtcagttatacattcatg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40296382 |
catcacttctgtgagactcactgccagtttctttaactcagaccgatattctgacatggtttccctgtcattcacatgagaagtcagttatacattcatg |
40296283 |
T |
|
| Q |
418 |
ttgaaactctacctattatgctatgtcatgtcatgttctcacttagcatgttttgaagtgctgtccttgaatcctaa-aaaagtatattggtttcaactc |
516 |
Q |
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| T |
40296282 |
ttgaaactctacctattatgccatgtcatgtcatgttctcacttagcatgttttgaagtgctgtccttgaatcctaaaaaaagtatattggtttcaactc |
40296183 |
T |
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| Q |
517 |
ttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagtaagagaacttg |
586 |
Q |
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| T |
40296182 |
ttcaaaactttccaattttagatgttattttgaaatcacctattttagtaaacaagagtaagagaacttg |
40296113 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 304; E-Value: 1e-170
Query Start/End: Original strand, 672 - 975
Target Start/End: Complemental strand, 40296016 - 40295713
Alignment:
| Q |
672 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
771 |
Q |
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| T |
40296016 |
gagtaagtataatgtataacagaagagagtatgcatgagatgacaggtggtgttctttctgatatcaatatgcttgactaacttttacttggaaagaaca |
40295917 |
T |
|
| Q |
772 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
871 |
Q |
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| T |
40295916 |
tttgatttgctttgtacctgaaacttggtgtattttctggccattcgttatcatccaagagagtgataacatcctcccagtccacattctccaatttctc |
40295817 |
T |
|
| Q |
872 |
actgctcttcttttcagctatatcattcagaagcttcactgttttggagtttttgaaattctcctctctttccagcttatagaactcagatgaaaccttc |
971 |
Q |
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| T |
40295816 |
actgctcttcttttcagctatatcattcagaagcttcactgttttggagtttttgaaattctcctctctttccagcttatagaactcagatgaaaccttc |
40295717 |
T |
|
| Q |
972 |
ttca |
975 |
Q |
| |
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|||| |
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| T |
40295716 |
ttca |
40295713 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000004
Query Start/End: Original strand, 649 - 678
Target Start/End: Complemental strand, 40296050 - 40296021
Alignment:
| Q |
649 |
acaagaaataaattcttcctggtgagtaag |
678 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
40296050 |
acaagaaataaattcttcctggtgagtaag |
40296021 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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